BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082519 =	234 (1.150)	11 (0.060)	7/142	NT	5.3%	intergenic (+160/+164)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	2082566 =	187 (1.040)	11 (0.060)	7/142	NT	5.3%	intergenic (+207/+117)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 292 total aligned reads displayed.

CTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAC  >  USA300TCH1516_ALE/2082429‑2082609

cttTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCaaaa                                                                                            <  2:1682605/91‑1 (MQ=255)

cttTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCaaaa                                                                                            <  1:2568847/91‑1 (MQ=255)

 tttGAAAGTCTCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCaaaaa                                                                                           <  1:3551127/91‑1 (MQ=255)

   tCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAAt                                                                                         >  1:3931596/1‑91 (MQ=255)

     aaaGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCg                                                                                       >  1:3343185/1‑91 (MQ=255)

      aaGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCgg                                                                                      >  1:2419431/1‑91 (MQ=255)

        gggtgccttttacagttgtagagatgtgatgcttgaatgtttgaagtgatttgccaaaagttatataaattggttctataatAAATCGGAc                                                                                    <  2:750310‑M1/9‑1 (MQ=255)

        gTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGAc                                                                                    <  1:1530461/91‑1 (MQ=255)

        gTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCACTCCTAACAAAATCAAAAAATCGGAc                                                                                    <  2:1538203/91‑1 (MQ=255)

         tATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACa                                                                                   <  1:2657441/91‑1 (MQ=255)

          aTCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAAAAAAAAAAAAAAATCGGACAg                                                                                  <  2:704063/91‑1 (MQ=255)

           tCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGa                                                                                 <  2:346257/91‑1 (MQ=255)

           tCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGa                                                                                 >  2:493819/1‑91 (MQ=255)

            cATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCAAAAAAAAAAAAAAAATCGGACAGAt                                                                                <  2:682463/91‑1 (MQ=255)

             aTAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATg                                                                               <  1:82767/91‑1 (MQ=255)

              tAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTTATTAGTTTTATACATCTCTCCTAACAAAATCAAACAATCGGACAGATGa                                                                              >  2:3250324/1‑91 (MQ=255)

                 gATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGaaaa                                                                           >  2:2773516/1‑91 (MQ=255)

                 gATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGaaaa                                                                           >  1:2730052/1‑91 (MQ=255)

                   tatatTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGt                                                                         >  1:794177/1‑91 (MQ=255)

                    atatTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCAAAAAAAAAAAAAAAATCGGACAGATGAAAAGTa                                                                        <  2:417702/91‑1 (MQ=39)

                       ttttATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTaaaa                                                                     >  2:2113579/1‑91 (MQ=255)

                           aTTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACt                                                                 >  2:272470/1‑91 (MQ=255)

                           aTTCAGCAACTTGTCAAACACTATACCGAATTAGGTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACt                                                                 <  2:1025907/91‑1 (MQ=255)

                            ttCAGCAACTTGTCAAAAACTATAACTAATTAGTTTTATACATATCAACTAACAAAATCAAAAAATCGGACAAATAAAAAATAAAAAACtt                                                                <  2:147383/91‑1 (MQ=37)

                                  aaCTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAGATCGGACAGATGAAAAGTAAAAAACTTTTTCTa                                                          <  1:1159126/91‑1 (MQ=255)

                                   gatgcttgaatgtttgaagtgatttgccaaaagttatataaattggttctataatAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTAt                                                         >  1:1649313‑M1/56‑91 (MQ=255)

                                   gatgcttgaatgtttgaagtgatttgccaaaagttatataaattggttctataatAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTAt                                                         >  1:3067479‑M1/56‑91 (MQ=255)

                                   aCTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTAt                                                         <  1:518862/91‑1 (MQ=255)

                                    cTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATc                                                        <  1:2954123/91‑1 (MQ=255)

                                    atgcttgaatgtttgaagtgatttgccaaaagttatataaattggttctataatAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATc                                                        >  2:1922886‑M1/55‑91 (MQ=255)

                                       gTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGt                                                     >  2:3176681/1‑91 (MQ=255)

                                        tCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTc                                                    <  1:3467889/91‑1 (MQ=255)

                                        tCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTc                                                    >  1:482915/1‑91 (MQ=255)

                                        tCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTc                                                    >  2:1754614/1‑91 (MQ=255)

                                        tCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTc                                                    >  1:2763315/1‑91 (MQ=255)

                                         cAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACGGATGAAAAGTAAAAAACTTTTTCTATCAGTcc                                                   <  2:3884812/91‑1 (MQ=255)

                                          gaatggttgaagtgatttgccaaaagttatataaatgggttctataatAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCg                                                  >  2:1300260‑M1/49‑91 (MQ=255)

                                          aaaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCg                                                  >  1:943305/1‑91 (MQ=255)

                                          aaaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCg                                                  <  2:502061/91‑1 (MQ=255)

                                          aaaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCg                                                  >  2:620093/1‑91 (MQ=255)

                                           aaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGa                                                 <  1:3703910/91‑1 (MQ=255)

                                           aaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGa                                                 <  2:1397208/91‑1 (MQ=255)

                                           aaCACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGa                                                 >  1:2443856/1‑91 (MQ=255)

                                           aaCACTATACCTAATTAGTTTTATACATCTCTCATAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGa                                                 <  2:457380/91‑1 (MQ=255)

                                           aaCACTATACCTAATTAAATTTATACAACTATAATAAAAAAAAAAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGa                                                 <  2:1865855/91‑1 (MQ=18)

                                                tataCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttat                                            >  2:762877/1‑91 (MQ=255)

                                                   aCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTtattat                                         >  1:2249565/1‑91 (MQ=255)

                                                   aCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTtattat                                         <  1:3758161/91‑1 (MQ=255)

                                                    ccTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATtata                                        <  2:1617506/91‑1 (MQ=255)

                                                    ccTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATtata                                        <  2:2262836/91‑1 (MQ=255)

                                                       aaTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGaa                                     >  2:3000485/1‑91 (MQ=255)

                                                       aaTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGaa                                     <  1:2237479/91‑1 (MQ=255)

                                                       aaTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGaa                                     <  2:1355843/91‑1 (MQ=255)

                                                        aTTAGTTTTATACATCTCTCCTAACAAAGTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAAc                                    <  1:1460895/91‑1 (MQ=255)

                                                           aGTTTTATACATCCCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGCCAAAAACTCTTTCTATCAGTCCGATTCATTATAGAACCaa                                 >  2:334287/1‑91 (MQ=18)

                                                             ttttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAtt                               >  2:3915018/1‑91 (MQ=255)

                                                             ttttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAtt                               >  2:2897882/1‑91 (MQ=255)

                                                             ttttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAtt                               >  2:2352140/1‑91 (MQ=255)

                                                                tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                            <  2:1134761/91‑1 (MQ=255)

                                                                tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                            <  1:2094070/91‑1 (MQ=255)

                                                                tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                            <  1:2295202/91‑1 (MQ=255)

                                                                tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                            <  1:2009328/91‑1 (MQ=255)

                                                                  taCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatat                          <  2:1836222/91‑1 (MQ=255)

                                                                  taCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatat                          <  2:3089416/91‑1 (MQ=255)

                                                                  taCATATCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatat                          <  2:3636834/91‑1 (MQ=255)

                                                                    cATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATaa                        <  1:2939180/91‑1 (MQ=255)

                                                                      tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                      >  1:618377/1‑91 (MQ=255)

                                                                      tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                      >  2:3752098/1‑91 (MQ=255)

                                                                      tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                      >  2:3699371/1‑91 (MQ=255)

                                                                      tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                      >  1:3197637/1‑91 (MQ=255)

                                                                      tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                      <  1:1823415/91‑1 (MQ=255)

                                                                      tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                      >  2:9129/1‑91 (MQ=255)

                                                                       ctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACtt                     <  1:403569/91‑1 (MQ=255)

                                                                        tctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACttt                    <  1:543750/91‑1 (MQ=255)

                                                                          tcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTg                  <  2:612490/91‑1 (MQ=255)

                                                                          tcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAATCCGATTTATTATAGAACCAATTTATATAACTTTTg                  >  2:3572173/1‑91 (MQ=255)

                                                                           ccTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTgg                 >  2:1317578/1‑91 (MQ=255)

                                                                           ccTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTgg                 >  1:2472323/1‑91 (MQ=255)

                                                                           ccTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTgg                 <  1:1344025/91‑1 (MQ=255)

                                                                            cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                <  2:123807/91‑1 (MQ=255)

                                                                            cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                >  2:282934/1‑91 (MQ=255)

                                                                            cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                >  1:1004079/1‑91 (MQ=255)

                                                                            cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                <  1:895485/91‑1 (MQ=255)

                                                                            atAAAAAAAACAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                <  2:3816826/90‑1 (MQ=255)

                                                                             tAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCa               <  1:2894132/91‑1 (MQ=255)

                                                                             tAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTGCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCa               <  1:3135322/91‑1 (MQ=255)

                                                                               aCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaaa             >  1:1254741/1‑91 (MQ=255)

                                                                                cAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAAt            <  2:509541/91‑1 (MQ=255)

                                                                                 aaaaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATc           >  2:155103/1‑91 (MQ=255)

                                                                                   aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCAc         <  1:2704918/91‑1 (MQ=255)

                                                                                     tCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACtt       >  1:1905586/1‑91 (MQ=255)

                                                                                       aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTCTATAACTTTTGGCAAATCACTTCa     >  1:733493/1‑91 (MQ=255)

                                                                                       aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa     <  1:3727263/91‑1 (MQ=255)

                                                                                       aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa     <  2:377899/91‑1 (MQ=255)

                                                                                       aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa     <  2:817624/91‑1 (MQ=255)

                                                                                        aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa    >  2:90695/1‑91 (MQ=255)

                                                                                        aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa    >  2:2539086/1‑91 (MQ=255)

                                                                                        aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa    >  1:2156143/1‑91 (MQ=255)

                                                                                          AAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc  >  1:3247230‑M1/1‑91 (MQ=255)

                                                                                          AAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc  <  1:108488‑M1/91‑1 (MQ=255)

CTTTCAAAGTATCATAAGATATATTTTATTCAGCAACTTGTCAAACACTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAC  >  USA300TCH1516_ALE/2082429‑2082609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.