BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082519 =	234 (1.150)	11 (0.060)	7/142	NT	5.3%	intergenic (+160/+164)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	2082566 =	187 (1.040)	11 (0.060)	7/142	NT	5.3%	intergenic (+207/+117)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 274 total aligned reads displayed.

CTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGT  >  USA300TCH1516_ALE/2082476‑2082656

cTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCACAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATtta                                                                                            <  2:3478017/91‑1 (MQ=255)

   taCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATttatta                                                                                         <  1:1932780/91‑1 (MQ=255)

    aCCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTtattat                                                                                        <  1:3758161/91‑1 (MQ=255)

     ccTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATtata                                                                                       >  1:2708172/1‑91 (MQ=255)

      cTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAg                                                                                      <  2:2168560/91‑1 (MQ=255)

      atAATTAGTTATATACATCTCACATAACAAAACCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAg                                                                                      <  2:138931/90‑1 (MQ=18)

        gatttgccaaaagttatataaattggttctataatAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGaa                                                                                    >  2:1847319‑M1/36‑91 (MQ=255)

        aaTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGaa                                                                                    <  2:1355843/91‑1 (MQ=255)

        aaTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGaa                                                                                    >  2:3000485/1‑91 (MQ=255)

        aaTTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGaa                                                                                    <  1:2237479/91‑1 (MQ=255)

              ttttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAtt                                                                              >  2:2897882/1‑91 (MQ=255)

               tttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAttt                                                                             >  1:2276473/1‑91 (MQ=255)

               tttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAAttt                                                                             >  2:3232390/1‑91 (MQ=255)

                ttATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTta                                                                            <  2:1749877/91‑1 (MQ=255)

                 tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                                                                           <  1:2009328/91‑1 (MQ=255)

                 tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                                                                           <  1:2094070/91‑1 (MQ=255)

                 tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                                                                           <  2:1134761/91‑1 (MQ=255)

                 tataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtat                                                                           <  1:2295202/91‑1 (MQ=255)

                  ataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtata                                                                          <  1:2961851/91‑1 (MQ=255)

                  ataCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtata                                                                          <  1:2630534/91‑1 (MQ=255)

                   taCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatat                                                                         <  2:1539597/91‑1 (MQ=255)

                   taCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatat                                                                         <  1:3245681/91‑1 (MQ=255)

                   taCATATCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatat                                                                         <  2:3636834/91‑1 (MQ=255)

                    aCATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTtatata                                                                        <  2:733969/91‑1 (MQ=255)

                       tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                                     <  1:3450350/91‑1 (MQ=255)

                       tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                                     >  2:3752098/1‑91 (MQ=255)

                       tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                                     >  1:488017/1‑91 (MQ=255)

                       tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                                     >  2:9129/1‑91 (MQ=255)

                       tctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACt                                                                     >  1:618377/1‑91 (MQ=255)

                        ctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTTTATCTTTCTGATTTATTATAGAACCAATTTATATAACtt                                                                    >  2:1300843/1‑91 (MQ=21)

                        ctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACtt                                                                    <  1:2849727/91‑1 (MQ=255)

                        ctctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACtt                                                                    <  1:403569/91‑1 (MQ=255)

                        ctcacCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACtt                                                                    <  2:2807211/91‑1 (MQ=255)

                         tctcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACttt                                                                   <  2:855939/91‑1 (MQ=255)

                           tcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTg                                                                 >  2:2289673/1‑91 (MQ=255)

                           tcCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTg                                                                 <  2:612490/91‑1 (MQ=255)

                            ccTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTgg                                                                >  2:1566970/1‑91 (MQ=255)

                            ccTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTgg                                                                <  1:1342483/91‑1 (MQ=255)

                             cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                                                               >  1:1004079/1‑91 (MQ=255)

                             cTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                                                               <  2:123822/91‑1 (MQ=255)

                             atAAAAAAAACAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGc                                                               <  2:3816826/90‑1 (MQ=255)

                              tAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCa                                                              <  1:2894132/91‑1 (MQ=255)

                              tAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTGCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCa                                                              <  1:3135322/91‑1 (MQ=255)

                                aCAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCaaa                                                            >  1:1254741/1‑91 (MQ=255)

                                    aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCAc                                                        <  1:2704756/91‑1 (MQ=255)

                                    aaTCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCAc                                                        >  1:1467525/1‑91 (MQ=255)

                                        aataaatcggactgatagaaaaagttttttacttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa                                                    >  2:800921‑M2/51‑91 (MQ=255)

                                        aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTCTATAACTTTTGGCAAATCACTTCa                                                    >  1:733493/1‑91 (MQ=255)

                                        aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa                                                    <  1:3712035/91‑1 (MQ=255)

                                        aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa                                                    <  2:504493/91‑1 (MQ=255)

                                        aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa                                                    >  1:1469013/1‑91 (MQ=255)

                                        aaaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCa                                                    <  2:377899/91‑1 (MQ=255)

                                         aaaaaTCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCaa                                                   >  2:90695/1‑91 (MQ=255)

                                           aaatcggactgatagaaaaagttttttacttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc                                                 >  1:2142339‑M2/48‑91 (MQ=255)

                                           AAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAAc                                                 <  2:2871812‑M1/91‑1 (MQ=255)

                                           AAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATATATATAACTTTTGGCAAATCACTTCAAAc                                                 <  1:930240‑M1/91‑1 (MQ=255)

                                            AATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACa                                                >  1:2977930‑M1/1‑91 (MQ=255)

                                             ATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAt                                               >  1:2735905‑M1/1‑91 (MQ=255)

                                             ATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAt                                               >  2:3063444‑M1/1‑91 (MQ=255)

                                              TCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACAtt                                              >  1:1371346‑M1/1‑91 (MQ=255)

                                               cggactgatagaaaaagttttttacttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTc                                             >  1:2462960‑M2/44‑91 (MQ=255)

                                               CGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTc                                             <  2:960337‑M1/91‑1 (MQ=255)

                                                 GACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAATTTTTGGCAAATCACTTCAAACATTCaa                                           <  2:77062‑M1/91‑1 (MQ=255)

                                                 GACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCaa                                           <  1:3823125‑M1/91‑1 (MQ=255)

                                                 GACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCaa                                           <  2:1987513‑M1/91‑1 (MQ=255)

                                                 GACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCaa                                           <  1:851014‑M1/91‑1 (MQ=255)

                                                  ACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAg                                          <  1:3121006‑M1/91‑1 (MQ=255)

                                                  ACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAg                                          >  1:817726‑M1/1‑91 (MQ=255)

                                                    aGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCa                                        <  1:1790370/91‑1 (MQ=255)

                                                      atagaaaaagttttttacttttcatctgtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATc                                      >  1:1649313‑M2/37‑91 (MQ=255)

                                                      aTGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAGCATTCAAGCATc                                      <  1:3025347/91‑1 (MQ=255)

                                                         aaaaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATcaca                                   <  1:274963/91‑1 (MQ=255)

                                                           aaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAtc                                 <  2:1007511/91‑1 (MQ=255)

                                                           aaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAtc                                 <  1:60166/91‑1 (MQ=255)

                                                           aaGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATCTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAtc                                 <  2:2541436/91‑1 (MQ=255)

                                                             gTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACAtctc                               <  2:2443787/91‑1 (MQ=255)

                                                              tAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATctct                              >  1:694003/1‑91 (MQ=255)

                                                               aaaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAGATCACTTCAAACATTCAAGCATCACATCTCTa                             <  2:3879631/91‑1 (MQ=255)

                                                               aaaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTa                             >  2:1097051/1‑91 (MQ=255)

                                                               aaaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTa                             >  2:1630104/1‑91 (MQ=255)

                                                                aaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTAc                            >  1:1060773/1‑91 (MQ=255)

                                                                aaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTAc                            >  1:1113063/1‑91 (MQ=255)

                                                                aaaaaCTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTAc                            >  1:3880670/1‑91 (MQ=255)

                                                                         ttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTaaa                   >  1:2438615/1‑91 (MQ=255)

                                                                         ttCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTaaa                   >  2:51250/1‑91 (MQ=255)

                                                                          tCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAACCATCACATCTCTACAAATGTaaaa                  >  2:3670973/1‑91 (MQ=255)

                                                                           cTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAg                 >  2:3572281/1‑91 (MQ=255)

                                                                           cTATCAGTCCGATTTATTATAGAACCAAGTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAg                 <  2:2388520/91‑1 (MQ=255)

                                                                             aTCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGc               <  1:1570631/91‑1 (MQ=255)

                                                                               cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAc             >  2:1672262/1‑91 (MQ=255)

                                                                               cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAc             <  1:1855965/91‑1 (MQ=255)

                                                                               cAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAc             >  2:2608056/1‑91 (MQ=255)

                                                                                aGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAcc            <  1:3311894/91‑1 (MQ=255)

                                                                                 gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCGCATCTCTACAAAGGTAAAAGGCAccc           <  2:750441‑M2/82‑1 (MQ=255)

                                                                                 gtccgatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCAccc           <  1:531586‑M2/82‑1 (MQ=255)

                                                                                     gatttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACg       <  1:933897‑M2/86‑1 (MQ=255)

                                                                                       tttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAt     <  2:3943285‑M2/88‑1 (MQ=255)

                                                                                        ttATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGAtt    <  1:1613638‑M2/89‑1 (MQ=255)

                                                                                          attatAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATtgt  <  2:617928/91‑1 (MQ=255)

                                                                                          attatAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATtgt  >  2:1949963/1‑91 (MQ=255)

CTATACCTAATTAGTTTTATACATCTCTCCTAACAAAATCAAAAAATCGGACAGATGAAAAGTAAAAAACTTTTTCTATCAGTCCGATTTATTATAGAACCAATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGT  >  USA300TCH1516_ALE/2082476‑2082656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.