| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2141814 = | 179 (0.880) | 17 (0.090) | 11/152 | NT | 8.7% | coding (274/1617 nt) | groL | 60 kDa chaperonin |
| ? | USA300TCH1516_ALE | 2141841 = | 187 (0.970) | coding (247/1617 nt) | groL | 60 kDa chaperonin | |||||
TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2141907‑2141814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > USA300TCH1516_ALE/2141841‑2141930 TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTG > 1:1041910/1‑91TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTG < 2:1342924/91‑1 TAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGC > 1:3554811/1‑91 TAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGC < 1:147278/91‑1 TAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGC < 1:148115/91‑1 TAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGC > 1:1565889/1‑91 AGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCATATAAGACAAATGACATTGCTGGTGACGGTACGACCACTGCA > 2:3485211/1‑91 AGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCA > 2:1818076/1‑91 AGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCA > 1:95513/1‑91 AGAAGATCCATATGAAAATATGGCGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAGTGAAATTGCTGGTGACGGTACGACAACTGCA < 2:3025894/91‑1 AGAAGATCCATAGGAAGATATGGGGGCTAAACTAGTGCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCA < 2:2385074/91‑1 GAAGATCCATATGCAAATATGGGGGCTCAACTAGTTCAAGAAGTCGCAAATACGACAAATGACATTGCTGGTGACGGTACGACAACTGCAA > 2:303170/1‑91 GAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA > 1:2483404/1‑91 GAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA < 2:2015216/91‑1 GAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA > 1:745381/1‑91 GAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA < 2:2015171/91‑1 GAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA < 2:1288705/91‑1 AATTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTGTTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCAGATGGATCT > 2:3760133/1‑91 AATTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCT > 2:1862304/1‑91 AATTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCT > 2:1862303/1‑91 ATTGCTCGTGACGGTACGCCAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTc > 2:361806/1‑90 TTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTC > 2:3120010/1‑91 TTGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTC > 2:735929/1‑91 TGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCT > 2:1561077/1‑91 TGCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATCTTCATTTGGATCTTCT > 2:826234/1‑91 GCTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTA > 1:1114041/1‑91 CTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAA > 1:1105232/1‑91 CTGGTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAA > 1:1105251/1‑91 GTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTC > 1:693950/1‑91 GTGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTC > 1:693812/1‑91 TGACGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCG > 2:611296/1‑91 CGGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATT > 1:1640144/1‑91 GGTACGACAACTGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTT > 1:3257882/1‑91 GACAACAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTA > 2:1681234/1‑91 GCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCG > 1:3539119/1‑91 GCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCG < 2:799124/91‑1 GCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCG < 2:1011706/91‑1 CAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGT < 1:789735/91‑1 CAATTTCATTTGACATATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGACCTTCTAATTCGAATTCTTTAGCAATCGc > 2:3565110/1‑90 AATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTC > 2:3496283/1‑91 ATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > 1:3021250/1‑91 ATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > 1:1350589/1‑91 TTAGAAGATCCATATGAAAATATGGGGGCTAAACTAGTTCAAGAAGTCGCAAATAAGACAAATGAAATTGCTGGTGACGGTACGACAACTGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2141907‑2141814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCA > USA300TCH1516_ALE/2141841‑2141930 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |