BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2141814 =	179 (0.880)	17 (0.090)	11/152	NT	8.7%	coding (274/1617 nt)	groL	60 kDa chaperonin
*	?	USA300TCH1516_ALE	2141841 =	187 (0.970)	17 (0.090)	11/152	NT	8.7%	coding (247/1617 nt)	groL	60 kDa chaperonin

Only 100 of 257 total aligned reads displayed.

CTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCAC  >  USA300TCH1516_ALE/2141751‑2141931

gagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGGCGTACCGTCACGAGCAAt                                                                                            >  2:361806‑M1/64‑91 (MQ=255)

 agatccatctgaaaatatgggggctaaactagttcaagaagtcgcaaacaagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAGCAAtt                                                                                           >  2:3760133‑M1/63‑91 (MQ=255)

 agatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAGCAAtt                                                                                           >  2:1862304‑M1/63‑91 (MQ=255)

  gggTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAttt                                                                                          <  1:2638566/91‑1 (MQ=255)

      tCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAtt                                                                                      >  2:1563077/1‑91 (MQ=255)

      tCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAtt                                                                                      <  2:16256/91‑1 (MQ=255)

      tCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAtt                                                                                      >  2:3243676/1‑91 (MQ=255)

       cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt                                                                                     <  1:3480330/91‑1 (MQ=255)

       cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt                                                                                     >  2:1528483/1‑91 (MQ=255)

       cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt                                                                                     <  2:3541542/91‑1 (MQ=255)

       cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt                                                                                     >  2:554841/1‑91 (MQ=255)

         gaccacTTGGATGATTTTGCAGGCCTCCTAGATGCATTGCTTGAGCTAGTACTGGTGCGGTGGTCGTACCGTCACCAGCTATGTCATTTGt                                                                                   <  2:3838179/90‑1 (MQ=255)

         caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt                                                                                   <  2:1315592/91‑1 (MQ=255)

         caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt                                                                                   <  1:283098/91‑1 (MQ=255)

         caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt                                                                                   <  1:2215479/91‑1 (MQ=255)

           ccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCt                                                                                 >  2:420880/1‑91 (MQ=255)

            cacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCtt                                                                                >  1:2920674/1‑91 (MQ=255)

             acTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTa                                                                               >  2:3594864/1‑91 (MQ=255)

             acTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTa                                                                               >  1:1649047/1‑91 (MQ=255)

              cTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTAt                                                                              >  2:2674874/1‑91 (MQ=255)

              cTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTAt                                                                              >  1:326329/1‑91 (MQ=255)

                tGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTAttt                                                                            <  1:1029659/91‑1 (MQ=255)

                 gTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTg                                                                           <  2:3899105/91‑1 (MQ=255)

                  tAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGc                                                                          <  1:2747756/91‑1 (MQ=255)

                  tAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGc                                                                          >  1:1826528/1‑91 (MQ=255)

                   aaCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCg                                                                         <  1:1794888/91‑1 (MQ=255)

                   aaCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCg                                                                         >  1:3599055/1‑91 (MQ=255)

                    aCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGa                                                                        <  2:2137518/91‑1 (MQ=255)

                    aCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGa                                                                        <  1:737463/91‑1 (MQ=255)

                    aCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGa                                                                        <  1:3144342/91‑1 (MQ=255)

                     cATTTTCCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGAc                                                                       <  2:1732128/91‑1 (MQ=255)

                       tttttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActt                                                                     <  2:876632/91‑1 (MQ=255)

                         tttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAGTTTCATTTGTCTTATTTGCGActtct                                                                   <  2:2249227/91‑1 (MQ=255)

                          ttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActtctt                                                                  >  1:11300/1‑91 (MQ=255)

                          ttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActtctt                                                                  <  2:1114245/91‑1 (MQ=255)

                              aGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAAc                                                              <  1:2504034/91‑1 (MQ=255)

                                   tcttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGtt                                                         <  1:350514/91‑1 (MQ=255)

                                    cttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGttt                                                        >  1:1416662/1‑91 (MQ=255)

                                    cttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGttt                                                        >  1:3572774/1‑91 (MQ=255)

                                       gAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGc                                                     >  2:2467956/1‑91 (MQ=255)

                                        aaTCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcc                                                    >  1:3624102/1‑91 (MQ=255)

                                          tCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcccc                                                  <  1:426208/91‑1 (MQ=255)

                                           cATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGccccc                                                 <  1:3841570/91‑1 (MQ=255)

                                           cATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGccccc                                                 <  2:3168557/91‑1 (MQ=255)

                                           cATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACCAGTTTAGccccc                                                 >  2:3290639/1‑91 (MQ=255)

                                            aTTACTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAACCCCCa                                                <  1:3070426/91‑1 (MQ=255)

                                              tGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCata                                              <  2:2387279/91‑1 (MQ=255)

                                               gCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCatat                                             <  1:1078648/91‑1 (MQ=255)

                                                 ttGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAttt                                           >  1:3724680/1‑91 (MQ=255)

                                                  tGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAtttt                                          >  2:3197415/1‑91 (MQ=255)

                                                    aGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCa                                        >  2:3463783/1‑91 (MQ=255)

                                                     gCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCat                                       >  1:510076/1‑91 (MQ=255)

                                                      cTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCata                                      <  2:1271623/91‑1 (MQ=255)

                                                      cTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCata                                      <  2:280608/91‑1 (MQ=255)

                                                       tAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatat                                     <  2:145767/91‑1 (MQ=255)

                                                        aaTACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATg                                    <  2:2781567/91‑1 (MQ=255)

                                                        aaTACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATg                                    >  2:3794348/1‑91 (MQ=255)

                                                            cTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGTtc                                >  1:929791/1‑91 (MQ=255)

                                                            cTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtc                                <  1:15390/91‑1 (MQ=255)

                                                            cTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtc                                >  2:2863873/1‑91 (MQ=255)

                                                            cTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtc                                <  1:15330/91‑1 (MQ=255)

                                                              gTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtctt                              >  1:2471948/1‑91 (MQ=255)

                                                               ttgctggtgacggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtcttc                             >  2:735929‑M2/28‑91 (MQ=255)

                                                               TTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtcttc                             <  2:2015171‑M1/91‑1 (MQ=255)

                                                               TTGCAGTTGTCGTACCGTCACCAGCAATGTCATTTGTCGTATTTGCGACTTCTTGAACTAGTTGAGCCCCCATATTTGCATATGGAtcttc                             >  2:303170‑M1/1‑91 (MQ=255)

                                                                TGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtcttct                            >  2:1818076‑M1/1‑91 (MQ=255)

                                                                 GCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTa                           <  1:148115‑M1/91‑1 (MQ=255)

                                                                  ctggtgacggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTaa                          >  1:1105232‑M2/25‑91 (MQ=255)

                                                                   aGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAAt                         <  1:1955557/91‑1 (MQ=255)

                                                                    gTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAAtt                        >  1:634081/1‑91 (MQ=255)

                                                                    gTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAAtt                        >  2:2840883/1‑91 (MQ=255)

                                                                    gTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAAtt                        <  1:1002902/91‑1 (MQ=255)

                                                                     ttGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTc                       <  1:1286322/91‑1 (MQ=255)

                                                                     ttGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTc                       <  2:1999072/91‑1 (MQ=255)

                                                                     gtgacggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTc                       >  1:693812‑M2/22‑91 (MQ=255)

                                                                      tgacggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCg                      >  2:611296‑M2/21‑91 (MQ=255)

                                                                       gTCGTTCCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGa                     <  2:3647707/91‑1 (MQ=255)

                                                                       gTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGa                     <  2:499250/91‑1 (MQ=255)

                                                                       gTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGa                     <  1:2119201/91‑1 (MQ=255)

                                                                       gTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACCAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGa                     <  2:2623285/91‑1 (MQ=255)

                                                                         cggtacgacaactgcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGAtt                   >  1:1640144‑M2/18‑91 (MQ=255)

                                                                          gTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGAttt                  >  2:1081887/1‑91 (MQ=255)

                                                                          gTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGAttt                  >  2:2462886/1‑91 (MQ=255)

                                                                          gTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGAttt                  <  2:1233653/91‑1 (MQ=255)

                                                                          gTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGAttt                  >  2:766438/1‑91 (MQ=255)

                                                                            aCCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCt                >  2:1872012/1‑91 (MQ=255)

                                                                            aCCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCt                <  2:2550841/91‑1 (MQ=255)

                                                                             ccGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCtt               <  1:1336807/91‑1 (MQ=255)

                                                                               gacaacagcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTa             >  2:1681234‑M2/12‑91 (MQ=255)

                                                                                tCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAg            >  2:1949998/1‑91 (MQ=255)

                                                                                 cACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGc           >  1:251263/1‑91 (MQ=255)

                                                                                  aCCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCa          <  2:1978132/91‑1 (MQ=255)

                                                                                  aCCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCa          <  2:297179/91‑1 (MQ=255)

                                                                                   ccAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCaa         >  2:2999451/1‑91 (MQ=255)

                                                                                   ccAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCaa         >  2:3324451/1‑91 (MQ=255)

                                                                                   ccAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCaa         <  1:2411188/91‑1 (MQ=255)

                                                                                      gcaaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCg      <  2:1011706‑M2/87‑1 (MQ=255)

                                                                                       caaTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGt     <  1:789735‑M2/88‑1 (MQ=255)

                                                                                         aTTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCa   >  1:3021250‑M2/2‑91 (MQ=255)

                                                                                          tttCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTcac  <  2:1754571/91‑1 (MQ=255)

CTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTCTAATTCGATTTCTTTAGCAATCGTCAC  >  USA300TCH1516_ALE/2141751‑2141931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.