| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2141814 = | 179 (0.880) | 17 (0.090) | 11/152 | NT | 8.7% | coding (274/1617 nt) | groL | 60 kDa chaperonin |
| ? | USA300TCH1516_ALE | 2141841 = | 187 (0.970) | coding (247/1617 nt) | groL | 60 kDa chaperonin | |||||
Only 100 of 231 total aligned reads displayed.
CTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTC > USA300TCH1516_ALE/2141724‑2141904 | tgacgattgctaaagaaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaat > 1:3021250‑M1/91‑91 (MQ=255) tttGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGtt < 2:1208802/91‑1 (MQ=255) acgattgctaaagaaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTg < 1:789735‑M1/3‑1 (MQ=255) cgattgctaaagaaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGc < 2:799124‑M1/4‑1 (MQ=255) tCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAg < 1:457105/91‑1 (MQ=255) tCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAg > 2:2435266/1‑91 (MQ=255) cGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGt > 1:1233653/1‑91 (MQ=255) taaagaaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCTGTTGTc > 2:1681234‑M1/81‑91 (MQ=255) aCCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTc < 2:2793971/91‑1 (MQ=255) ccTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCg < 1:3100595/91‑1 (MQ=255) ccTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCg < 1:3836143/91‑1 (MQ=255) ccTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCg < 1:1797757/91‑1 (MQ=255) aaatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTAcc > 1:3257882‑M1/76‑91 (MQ=255) aatcgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCg > 1:1640144‑M1/75‑91 (MQ=255) cGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGt > 1:327714/1‑91 (MQ=255) cgaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCa > 2:611296‑M1/72‑91 (MQ=255) gaattagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCAc > 1:693812‑M1/71‑91 (MQ=255) aaaCCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCAc < 2:1280207/91‑1 (MQ=255) aaCCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCAcc > 2:230337/1‑91 (MQ=255) aaCCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCAcc > 2:1534039/1‑91 (MQ=255) ttagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAg > 1:1105232‑M1/68‑91 (MQ=255) tagaagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAGc > 1:1114041‑M1/67‑91 (MQ=255) cAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGc < 1:3186852/91‑1 (MQ=255) aaCTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCa < 1:3522790/91‑1 (MQ=255) gagatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGGCGTACCGTCACGAGCAAt > 2:361806‑M1/64‑91 (MQ=255) agatccatatgaaaatatgggggctaaactagttcaagaagtcgcaaataagacaaatgaaaTTGCAGTTGTCGTACCGTCACCAGCAAtt > 2:1862303‑M1/63‑91 (MQ=255) gggTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAttt < 1:2638566/91‑1 (MQ=255) gggTTCGCACCAATTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAAttt > 1:3052999/1‑91 (MQ=255) ggTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTc < 1:487275/91‑1 (MQ=255) ggTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTc > 2:2616471/1‑91 (MQ=255) tCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAtt > 2:1563077/1‑91 (MQ=255) tCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAtt < 2:16256/91‑1 (MQ=255) tCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAtt > 2:1481436/1‑91 (MQ=255) cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt > 2:554977/1‑91 (MQ=255) cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt < 2:2647591/91‑1 (MQ=255) cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt > 2:1528483/1‑91 (MQ=255) cGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCAttt < 2:3541542/91‑1 (MQ=255) gaccacTTGGATGATTTTGCAGGCCTCCTAGATGCATTGCTTGAGCTAGTACTGGTGCGGTGGTCGTACCGTCACCAGCTATGTCATTTGt < 2:3838179/90‑1 (MQ=255) caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt < 1:1446658/91‑1 (MQ=255) caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt < 2:1315592/91‑1 (MQ=255) caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt < 1:2215479/91‑1 (MQ=255) caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt < 1:283098/91‑1 (MQ=255) caccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGt < 2:2799353/91‑1 (MQ=255) ccacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCt > 2:420880/1‑91 (MQ=255) cacTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCtt > 1:2920674/1‑91 (MQ=255) acTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTa > 2:3594864/1‑91 (MQ=255) acTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTa > 1:1649017/1‑91 (MQ=255) gTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTg > 1:1898621/1‑91 (MQ=255) gTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTg < 2:3899105/91‑1 (MQ=255) tAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGc < 1:2747756/91‑1 (MQ=255) aaCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCg > 1:3599055/1‑91 (MQ=255) aaCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCg < 1:1794888/91‑1 (MQ=255) aCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGa < 1:737463/91‑1 (MQ=255) aCATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGa < 1:3144342/91‑1 (MQ=255) cATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGAc < 2:1732065/91‑1 (MQ=255) cATGTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGAc < 2:2720638/91‑1 (MQ=255) aTTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGAct > 2:2149531/1‑91 (MQ=255) tttttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActt < 2:876632/91‑1 (MQ=255) ttCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGActtctt < 2:1114245/91‑1 (MQ=255) tCAAGCCTTCTTGAACCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTg > 1:3959674/1‑91 (MQ=255) aGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAAc > 2:747054/1‑91 (MQ=255) aGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAAc < 1:2504034/91‑1 (MQ=255) gCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACt > 1:1026856/1‑91 (MQ=255) tcttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGtt > 1:3488405/1‑91 (MQ=255) cttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGttt > 1:3572774/1‑91 (MQ=255) ttGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTa < 1:12996/91‑1 (MQ=255) gAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGc > 1:3345511/1‑91 (MQ=255) gAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGc > 2:2468263/1‑91 (MQ=255) aaTCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcc > 1:3831397/1‑91 (MQ=255) aaTCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcc > 1:3624102/1‑91 (MQ=255) tCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGcccc < 1:1535262/91‑1 (MQ=255) cATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGccccc < 2:3168557/91‑1 (MQ=255) cATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACCAGTTTAGccccc > 2:3290639/1‑91 (MQ=255) aTTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa < 1:1494693/91‑1 (MQ=255) aTTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa < 2:1097616/91‑1 (MQ=255) aTTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa < 2:2816504/91‑1 (MQ=255) aTTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa < 2:3049816/91‑1 (MQ=255) aTTGCTTGAGCTAATACAGTTGCAGTTGTCGTTCCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCa < 1:3387616/91‑1 (MQ=255) tGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCata < 2:2387279/91‑1 (MQ=255) gCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCatat < 1:1078648/91‑1 (MQ=255) gCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCatat > 1:2010569/1‑91 (MQ=255) tGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAtttt > 2:3197415/1‑91 (MQ=255) tGAGCTAATACAGTTGCAGTTGTTGTACCGTCACCAGCAATTTCATTTGCCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATAtttt < 2:3015209/91‑1 (MQ=255) aGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCa > 2:1975947/1‑91 (MQ=255) aGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCa > 2:3463783/1‑91 (MQ=255) gCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGATCTAGTTTAGCCCCCATATTTTCat > 2:3687987/1‑91 (MQ=255) gCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCat > 1:510076/1‑91 (MQ=255) gCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCat < 2:3230477/91‑1 (MQ=255) gCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTC‑TATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatt > 1:1283016/1‑90 (MQ=255) cTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCata < 2:2041977/91‑1 (MQ=255) tAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatat < 2:1739340/91‑1 (MQ=255) tAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCatat < 2:145767/91‑1 (MQ=255) aaTACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATg > 2:3794348/1‑91 (MQ=255) tACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGa > 2:3318662/1‑91 (MQ=255) cTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGTtc > 1:929791/1‑91 (MQ=255) cTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtc > 2:2863873/1‑91 (MQ=255) cTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtc > 1:1738690/1‑91 (MQ=255) gTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtctt > 1:2604116/1‑91 (MQ=255) TTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtcttc > 1:2483404‑M1/1‑91 (MQ=255) TTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGAtcttc < 2:2015171‑M1/91‑1 (MQ=255) | CTTTGTCGATACCTTGTCGTAAACCAACTGGGTTCGCACCACTTGTAACATTTTTCAAGCCTTCTTGAATCATTGCTTGAGCTAATACTGTTGCAGTTGTCGTACCGTCACCAGCAATTTCATTTGTCTTATTTGCGACTTCTTGAACTAGTTTAGCCCCCATATTTTCATATGGATCTTC > USA300TCH1516_ALE/2141724‑2141904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |