| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2143370 = | 137 (0.670) | 11 (0.070) | 8/132 | NT | 9.0% | intergenic (+5/+20) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2143414 = | 109 (0.650) | coding (1230/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
ATGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2143473‑2143370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACT > USA300TCH1516_ALE/2143414‑2143503 ATGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGT > 1:3279244/1‑91ATGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGT > 2:282984/1‑91 TGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTG < 1:841253/91‑1 TGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTG > 1:798256/1‑91 TGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTG < 1:2273667/91‑1 TGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTG > 1:1631595/1‑91 TGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTG < 2:2845109/91‑1 GATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGT > 1:2187735/1‑91 GATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGT > 1:2187734/1‑91 GATGGTGGTATTTTCAATCATGCTATTCTTAGTTGTAAAGCGAAATAAAAAGAAAAATAAAAGCGAATCGCAGCGACGATAATCCGTGTGT < 2:2614231/91‑1 TGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGA > 1:3322539/1‑91 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT < 2:1501065/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT > 1:1047050/1‑91 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT < 2:222628/91‑1 GGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGAT > 2:3476624/1‑91 GTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATT < 1:3434785/91‑1 GTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATT < 1:3434731/91‑1 TGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGACTCACAGCGACGATAATCCGTGTGTGATTC > 1:3167136/1‑91 TGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTC > 1:335761/1‑91 TGGTATTTTCAATCATGCTATCCTTATTTGTAAAGCGAAATAAAAAGACAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTC > 1:335884/1‑91 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:3490536/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 2:3282471/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG > 1:2015268/1‑91 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 2:1924284/91‑1 GGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:2906914/91‑1 GGTATTTCCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCG < 1:1974110/91‑1 gcATTTTCAATCCTGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAGAAAAGACTCACTGCGACGATAATCCGTGTGTGATTCGT < 1:177951/89‑1 GTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGCCGATAATCCGTGTGTGATTCGT < 1:177916/91‑1 GTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGT > 1:167489/1‑91 TATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTT > 2:550979/1‑91 TATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTT > 2:3500053/1‑91 TATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTT > 2:2302063/1‑91 TATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTT > 2:2862737/1‑91 ATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT < 2:3346271/91‑1 ATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT < 2:3345648/91‑1 ATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT > 1:3313415/1‑91 ATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTT > 1:3313531/1‑91 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT < 1:217838/91‑1 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT > 2:2095518/1‑91 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT > 1:123559/1‑91 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT < 2:828034/91‑1 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT < 1:2111273/91‑1 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT > 2:2095419/1‑91 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT > 1:123641/1‑91 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT > 1:1348247/1‑91 TTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT < 1:2463703/91‑1 GCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTT > 1:128324/1‑91 AAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAA > 1:3207207/1‑91 AAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGTTTGAAAA > 2:2552937/1‑91 AACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATA > 1:1516269/1‑91 CGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACC > 1:2421405/1‑91 ACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATC > 2:685314/1‑91 ACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATC > 1:646842/1‑91 ACAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATC > 2:1153306/1‑91 CAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCA > 1:1088851/1‑91 CAGCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCA > 2:1752508/1‑91 GCGACGATAATCCGTGTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATA > 2:638764/1‑91 GTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAG < 1:2081566/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC > 1:3697005/1‑91 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 2:2652002/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 2:3896365/91‑1 TGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC > 1:818737/1‑91 TGATTCGTTTTTATTTTTCTTTTTAGTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGC < 1:2604088/91‑1 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATCCCACCATCATAGAACATACCATTGCTAGCC > 2:700467/1‑91 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC < 2:1587227/91‑1 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC < 2:2339776/91‑1 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC < 2:2499947/91‑1 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC > 2:700466/1‑91 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC < 1:1837362/91‑1 GATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCC < 1:1640297/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA < 1:1179592/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA > 1:2361664/1‑91 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA < 1:1433616/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA < 1:1873489/91‑1 ATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCA > 2:3221366/1‑91 TTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCCCCATCATAGAACATACAATTGCTAGCCAA > 2:1407477/1‑91 TTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAA > 2:3881326/1‑91 CGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACT < 2:1508685/91‑1 CGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACT < 1:1681518/91‑1 GTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTT < 2:283078/91‑1 gTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTT < 2:3829874/90‑1 TTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTCGCCAACTTT > 2:73708/1‑91 TTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTT > 1:1674226/1‑91 TTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTT > 1:1094913/1‑91 TTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTT < 2:1552949/91‑1 TTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTT > 2:1510381/1‑91 TTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTA > 1:3460766/1‑91 TTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTAC < 2:1602809/91‑1 TTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTAC < 2:1602673/91‑1 TATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACT < 1:3762198/91‑1 TATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACT > 2:665559/1‑91 TATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACT > 2:1480/1‑91 ATGATGGTGGTATTTTCAATCATGCTATTCTTATTTGTAAAGCGAAATAAAAAGAAAAATAAAAACGAATCACAGCGACGATAATCCGTGTGTGATTCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2143473‑2143370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACT > USA300TCH1516_ALE/2143414‑2143503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |