New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2143370 =137 (0.670)11 (0.070) 8/132 NT 9.0% intergenic (+5/+20) USA300HOU_RS10935/USA300HOU_RS10940 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE 2143414 = 109 (0.650)coding (1230/1254 nt) USA300HOU_RS10940 hypothetical protein

Only 100 of 227 total aligned reads displayed.

ACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACTA  >  USA300TCH1516_ALE/2143324‑2143504
                                                                                           |                                                                                          
 cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt                                                                                           <  1:810854/91‑1 (MQ=255)
 cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt                                                                                           <  1:2973164/91‑1 (MQ=255)
  tgAACAAGAAAATATTATATAGCACATTTTTATACATAAAA‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt                                                                                          <  2:3909465/90‑1 (MQ=255)
  ggAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt                                                                                          >  1:3395490/1‑91 (MQ=255)
  ggAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt                                                                                          <  2:2272966/91‑1 (MQ=255)
    aaCAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtttt                                                                                        <  1:2431097/91‑1 (MQ=255)
    aaCAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtttt                                                                                        <  1:786457/91‑1 (MQ=255)
      cAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAttttt                                                                                       <  1:383772/91‑1 (MQ=255)
      cAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTc                                                                                      <  2:1454651/91‑1 (MQ=255)
      aaaGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTc                                                                                      <  2:831198/90‑1 (MQ=255)
       aaGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACCCACGCATTATCTGCGCAGTGATTACATAATATTTTTCt                                                                                     >  2:1191900/1‑91 (MQ=255)
       aaGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCt                                                                                     >  2:3208583/1‑91 (MQ=255)
        aGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtt                                                                                    <  2:254725/91‑1 (MQ=255)
          cGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtttt                                                                                  <  2:2005403/91‑1 (MQ=255)
          cGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtttt                                                                                  <  2:2002673/91‑1 (MQ=255)
           gAATTTTATATAGCACATGTTAATTACAAAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttttt                                                                                 <  2:3436891/91‑1 (MQ=255)
             aTTTTATATATCACATTTTTATTCCATAAT‑ACAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTCTCTTTTTAt                                                                               >  2:3034721/1‑91 (MQ=255)
              ttttATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAAGCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt                                                                              <  2:927071/91‑1 (MQ=255)
                ttATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc                                                                            >  1:1404797/1‑91 (MQ=255)
                 tatataTCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGGTTCGTTTTTATTTTTTTTTTTATTTCg                                                                           >  1:2892021/1‑91 (MQ=255)
                  atatatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc                                                                          >  1:1552949/1‑91 (MQ=255)
                  atatatCACATTGTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc                                                                          <  2:419736/91‑1 (MQ=255)
                    atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                                                                        >  1:3906549/1‑91 (MQ=255)
                    atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                                                                        >  1:1504830/1‑91 (MQ=255)
                    atatCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt                                                                        <  1:2415286/91‑1 (MQ=255)
                     tatCACATTTTTATTCCATAAT‑AAAAAAACCGAATCACACACGCATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTTGCttt                                                                       >  2:3446633/1‑91 (MQ=255)
                       tCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCTCTTTat                                                                     >  2:3835122/1‑90 (MQ=255)
                          caTTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaaa                                                                  <  1:1889068/91‑1 (MQ=255)
                               ttATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACACATAAGa                                                             >  2:1093798/1‑91 (MQ=255)
                               ttATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGa                                                             >  1:2939975/1‑91 (MQ=255)
                                tATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa                                                            >  2:3826431/1‑91 (MQ=255)
                                 aTTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt                                                           >  2:2370736/1‑91 (MQ=255)
                                   tCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAg                                                         <  1:1087800/91‑1 (MQ=255)
                                    ccATAAT‑AAAAAAAACGAACCCCACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACCAATAAGAATAGc                                                        >  2:307832/1‑91 (MQ=255)
                                     aaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc                                                        >  1:128324‑M1/11‑91 (MQ=255)
                                      ataat‑aAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt                                                      >  1:2193169/1‑91 (MQ=255)
                                      ataaa‑aAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt                                                      <  2:2948503/91‑1 (MQ=255)
                                        aat‑aaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGa                                                    >  1:699202/1‑91 (MQ=255)
                                         at‑aaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGAt                                                   <  1:2680707/91‑1 (MQ=255)
                                            aaaaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTg                                                 >  1:1026575/1‑91 (MQ=255)
                                               aaaaacgaatcacagcgacgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa                                              >  1:3207207‑M2/45‑91 (MQ=255)
                                               AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa                                              >  2:2095518‑M1/1‑91 (MQ=255)
                                               AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa                                              <  1:2463703‑M1/91‑1 (MQ=255)
                                               AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa                                              >  1:123641‑M1/1‑91 (MQ=255)
                                               AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa                                              >  1:1348247‑M1/1‑91 (MQ=255)
                                                 AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt                                            >  1:3313531‑M1/1‑91 (MQ=255)
                                                 AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt                                            <  2:3346271‑M1/91‑1 (MQ=255)
                                                  aacgaatcacagcgacgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATa                                           >  1:1516269‑M2/42‑91 (MQ=255)
                                                  AACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATa                                           >  2:2302063‑M1/1‑91 (MQ=255)
                                                  AACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATa                                           >  2:3500053‑M1/1‑91 (MQ=255)
                                                   ACGAATCACACACGGATTATCGTCGCAGTGAGTCTTTTCTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAGGATTGAAaatgc                                          <  1:177951‑M1/91‑3 (MQ=255)
                                                    CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGGAAATacc                                         <  1:1974110‑M1/91‑1 (MQ=255)
                                                    CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                                         <  1:3490536‑M1/91‑1 (MQ=255)
                                                    CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                                         <  2:1924284‑M1/91‑1 (MQ=255)
                                                    CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc                                         <  2:3282471‑M1/91‑1 (MQ=255)
                                                     GAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTGTCTTTTTATTTCGCTTTACAAATAAGGATAGCATGATTGAAAATacca                                        >  1:335884‑M1/1‑91 (MQ=255)
                                                     GAATCACACACGGATTATCGTCGCTGTGAGTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacca                                        >  1:3167136‑M1/1‑91 (MQ=255)
                                                      AATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccac                                       <  1:3434785‑M1/91‑1 (MQ=255)
                                                       ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                                      <  2:1501065‑M1/91‑1 (MQ=255)
                                                       ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc                                      <  2:222628‑M1/91‑1 (MQ=255)
                                                          acagcgacgataatccgtgtgtgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatc                                   >  1:646842‑M2/34‑91 (MQ=255)
                                                          ACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatc                                   >  1:2187734‑M1/1‑91 (MQ=255)
                                                          ACACACGGATTATCGTCGCTGCGATTCGCTTTTATTTTTCTTTTTATTTCGCTTTACAACTAAGAATAGCATGATTGAAAATACCACcatc                                   <  2:2614231‑M1/91‑1 (MQ=255)
                                                           CACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatca                                  >  1:1631595‑M1/1‑91 (MQ=255)
                                                           CACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatca                                  <  1:841253‑M1/91‑1 (MQ=255)
                                                            ACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatcat                                 >  2:282984‑M1/1‑91 (MQ=255)
                                                            ACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatcat                                 >  1:3279244‑M1/1‑91 (MQ=255)
                                                                ggATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGaa                             <  1:1865078/91‑1 (MQ=255)
                                                                ggATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGaa                             >  1:2070554/1‑91 (MQ=255)
                                                                 gATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAAc                            <  2:256014/91‑1 (MQ=255)
                                                                  aTTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACa                           >  1:3312677/1‑91 (MQ=255)
                                                                  aTTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACa                           >  1:2105727/1‑91 (MQ=255)
                                                                   ttATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACAt                          <  2:1491723/91‑1 (MQ=255)
                                                                   ttATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACAATCATAGAACAt                          >  1:1767710/1‑91 (MQ=255)
                                                                    tATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATa                         >  1:2174815/1‑91 (MQ=255)
                                                                    tATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATa                         <  1:235159/91‑1 (MQ=255)
                                                                     aTCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAc                        <  2:2831964/91‑1 (MQ=255)
                                                                     aTCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAc                        <  2:1990236/91‑1 (MQ=255)
                                                                     aTCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAc                        >  1:3092823/1‑91 (MQ=255)
                                                                       cgtcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACaa                      >  1:1826741/1‑91 (MQ=255)
                                                                          cgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTg                   >  2:607941/1‑91 (MQ=255)
                                                                           gCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGc                  <  1:285633/91‑1 (MQ=255)
                                                                               tgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGc              <  2:2652002‑M2/79‑1 (MQ=255)
                                                                               tgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGc              >  1:3697005‑M2/13‑91 (MQ=255)
                                                                               tgattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGc              <  2:3896365‑M2/79‑1 (MQ=255)
                                                                                gattcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGcc             >  2:700466‑M2/12‑91 (MQ=255)
                                                                                 attcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCa            <  1:1433616‑M2/81‑1 (MQ=255)
                                                                                 attcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCa            <  1:1179592‑M2/81‑1 (MQ=255)
                                                                                  ttcgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCCCCATCATAGAACATACAATTGCTAGCCaa           >  2:1407477‑M2/10‑91 (MQ=255)
                                                                                   gcGTTTTTATTTTTGTGTTTATTGCGCTTTACAAATAAGAATGGCTTGCTTGAAGATACCACCATCATAGAACATCCAATTGCTAGCCAAc          <  2:442064/90‑1 (MQ=255)
                                                                                    cgtttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACt         <  1:1681518‑M2/84‑1 (MQ=255)
                                                                                      tttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTCGCCAACttt       >  2:73708‑M2/6‑91 (MQ=255)
                                                                                      tttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACttt       <  2:1552949‑M2/86‑1 (MQ=255)
                                                                                      tttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACttt       >  1:1674226‑M2/6‑91 (MQ=255)
                                                                                      tttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACttt       >  2:1510381‑M2/6‑91 (MQ=255)
                                                                                      tttttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACttt       >  1:1094913‑M2/6‑91 (MQ=255)
                                                                                         ttATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTAc    <  2:1602673‑M2/89‑1 (MQ=255)
                                                                                          tATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACt   <  1:3762198‑M2/90‑1 (MQ=255)
                                                                                          tATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACt   >  2:665559‑M2/2‑91 (MQ=255)
                                                                                           aTTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATTATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACta  >  2:943070/1‑91 (MQ=255)
                                                                                           |                                                                                          
ACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAAT‑AAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGCTAGCCAACTTTTACTA  >  USA300TCH1516_ALE/2143324‑2143504

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.