| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2143370 = | 137 (0.670) | 11 (0.070) | 8/132 | NT | 9.0% | intergenic (+5/+20) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2143414 = | 109 (0.650) | coding (1230/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
Only 100 of 284 total aligned reads displayed.
TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAA > USA300TCH1516_ALE/2143280‑2143460 | tCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAA > 2:35657‑M1/1‑91 (MQ=255)agtaaaagttggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaata < 1:3762198‑M1/1‑1 (MQ=255) cGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAA < 1:251633‑M1/91‑1 (MQ=255) gTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAA > 2:2041076‑M1/1‑91 (MQ=255) gTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAA < 1:336433‑M1/91‑1 (MQ=255) tataTTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAA > 2:785521‑M1/1‑91 (MQ=255) atatTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAAC < 1:3216254‑M1/91‑1 (MQ=255) aagttggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAAc < 2:283078‑M1/6‑1 (MQ=255) agttggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACg < 1:1681518‑M1/7‑1 (MQ=255) agttggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACg < 2:1508685‑M1/7‑1 (MQ=255) ttCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAA < 2:1493706‑M1/91‑1 (MQ=255) tggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAAt < 1:1179592‑M1/10‑1 (MQ=255) tggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAAt > 2:3221366‑M1/82‑91 (MQ=255) tggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAAt > 1:2361664‑M1/82‑91 (MQ=255) ggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATc > 2:700466‑M1/81‑91 (MQ=255) ggctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATc < 2:1587227‑M1/11‑1 (MQ=255) gctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaactaaaaagaaaaatAAAAACGAATca < 1:2604088‑M1/12‑1 (MQ=255) gctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATca > 1:818737‑M1/80‑91 (MQ=255) gctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATca < 2:2652002‑M1/12‑1 (MQ=255) gctagcaattgtatgttctatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATca > 1:3697005‑M1/80‑91 (MQ=255) ttACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacac < 2:1199468/91‑1 (MQ=255) tACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacaca < 1:2651612/91‑1 (MQ=255) aCTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCacacac > 1:472665/1‑91 (MQ=255) aCTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCacacac > 1:158433/1‑91 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACg > 1:2276786/1‑91 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACg < 2:468910/91‑1 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACg > 1:3663357/1‑91 (MQ=255) ttAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACgg < 2:2578005/91‑1 (MQ=255) aaTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAt > 1:2952467/1‑91 (MQ=255) aaTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAt > 1:2081595/1‑91 (MQ=255) aTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAtt < 2:1134581/91‑1 (MQ=255) tCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTa > 2:3830717/1‑91 (MQ=255) ccTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAt < 2:1431778/91‑1 (MQ=255) gAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTGCATAATAAAAAAAACGAATCACACACGGATTAtcgt > 2:3118418/1‑91 (MQ=255) gAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgt > 1:3424732/1‑91 (MQ=255) gAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgt > 1:2774298/1‑91 (MQ=255) aGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgtc > 2:2757926/1‑91 (MQ=255) aGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgtc > 1:1636504/1‑91 (MQ=255) ggCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgtcg < 1:217714/91‑1 (MQ=255) tatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGc > 2:638764‑M1/62‑91 (MQ=255) gCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGc > 2:1640297/1‑91 (MQ=255) gCTTTGAAAAAAGCCACGAAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtg < 2:1219022‑M1/91‑17 (MQ=255) gCTTTGAAAAAAGCCACGAAACAAGCGAATTTTATATATCACATTTTTATACCAAAATAAAAAAAACGAATCACAgcgacgataatccgtg < 2:1221462‑M1/91‑17 (MQ=255) cTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgt < 2:1722304‑M1/91‑18 (MQ=255) tttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtg > 2:945303‑M2/1‑89 (MQ=255) tttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtg < 1:1478750‑M2/91‑3 (MQ=255) tgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCtg > 1:1088851‑M1/60‑91 (MQ=255) tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtg < 2:74373‑M2/91‑5 (MQ=255) tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtg > 1:3475910‑M2/1‑87 (MQ=255) gAAAGAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATGCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtga < 2:1152395‑M1/91‑22 (MQ=255) gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtga < 1:793095‑M1/91‑22 (MQ=255) gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga > 1:597766‑M2/1‑86 (MQ=255) gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga < 1:3277569‑M2/91‑6 (MQ=255) ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat < 2:388415‑M2/88‑7 (MQ=255) ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCcgtgat < 2:1542840‑M2/88‑7 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgat < 1:17021‑M1/91‑23 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgat < 2:386411‑M1/91‑23 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtttgat > 1:3119014‑M2/1‑85 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat < 1:1457503‑M2/91‑7 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAACGTCGCtgtgat > 1:3036886‑M2/1‑85 (MQ=255) aaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgatt < 1:3201121‑M2/91‑8 (MQ=255) ggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCg > 1:2421405‑M1/53‑91 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATAACACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacaataatccgtgtgtgattcg < 2:1083908‑M1/91‑26 (MQ=255) aaGCCACGGAACAAGCGAATTTTATATATCAGATTTTTATTCCAGAATAAAAAGAACGAATCACAgcgacgataatccgtgtgtgattcgt < 1:3159557‑M1/91‑27 (MQ=255) aaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgt < 2:1450414‑M2/91‑11 (MQ=255) aaGCCACGGAACAAGCGAATTTTATATATCACATTTATATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgattcgt < 2:3905196‑M1/91‑27 (MQ=255) aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtt < 2:3407913‑M2/91‑12 (MQ=255) gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt < 2:3299916‑M2/91‑13 (MQ=255) ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgattcgtttt < 2:2003346‑M1/91‑30 (MQ=255) ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgattcgtttt < 1:1724005‑M1/91‑30 (MQ=255) cACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgcttcgtgttt < 1:3557630‑M2/91‑15 (MQ=255) ggAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt < 1:2442353/91‑1 (MQ=255) aGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtt < 2:254725/91‑1 (MQ=255) aaTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtttttt > 2:2038558/1‑90 (MQ=255) aTTTTATATATCACATTTTTATTCCATAATACAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTCTCTTTTTAt > 2:3034721/1‑91 (MQ=255) ttttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt < 2:2280903/91‑1 (MQ=255) ttttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt > 2:2000551/1‑91 (MQ=255) ttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCCTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc > 2:344653/1‑91 (MQ=255) atatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc < 1:1814408/91‑1 (MQ=255) atatatCACATTGTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc < 2:419736/91‑1 (MQ=255) atatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt > 1:3906549/1‑91 (MQ=255) atatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt > 1:1505258/1‑91 (MQ=255) tatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCttt < 2:3700531/91‑1 (MQ=255) tCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTAc > 2:837090/1‑91 (MQ=255) caTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACaaa < 1:1889068/91‑1 (MQ=255) ttttATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATaa > 2:2636474/1‑91 (MQ=255) ttttATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATaa < 2:2228946/91‑1 (MQ=255) ttATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGa > 1:2939975/1‑91 (MQ=255) tATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa > 2:3826431/1‑91 (MQ=255) aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt > 2:2370736/1‑91 (MQ=255) tCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAg < 2:1344473/91‑1 (MQ=255) aaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc > 1:128324‑M1/11‑91 (MQ=255) cATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCa > 1:1355578/1‑91 (MQ=255) ataataAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt > 1:3834994/1‑91 (MQ=255) ataataAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt > 1:2193169/1‑91 (MQ=255) ataaaaAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt < 2:2948503/91‑1 (MQ=255) aataaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGa > 1:699202/1‑91 (MQ=255) aaaaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTg > 1:1026575/1‑91 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa > 1:123641‑M1/1‑91 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa > 2:2095518‑M1/1‑91 (MQ=255) | TCGTTATATTCCAATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAA > USA300TCH1516_ALE/2143280‑2143460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |