| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2201275 = | 169 (0.830) | 13 (0.080) | 10/136 | NT | 8.5% | intergenic (+5/+364) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA |
| ? | USA300TCH1516_ALE | 2201326 = | 135 (0.780) | intergenic (+56/+313) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA | |||||
Only 100 of 101 total aligned reads displayed.
AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2201376‑2201275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTAT > USA300TCH1516_ALE/2201326‑2201415 AACGATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGGTTAATGGCAGCG < 1:3056919/91‑1AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCCATCATTCGTTTACTGGCAGCG > 2:589816/1‑91AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG < 1:801423/91‑1AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG > 2:589844/1‑91AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG > 2:2653243/1‑91AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG < 1:2954151/91‑1AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG > 1:1426075/1‑91AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCG > 1:1426261/1‑91 ACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGc > 1:890244/1‑90 ACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGA < 1:77318/91‑1 ACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGA > 2:2140769/1‑91 ACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGA > 1:2784760/1‑91 ACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGA > 1:273421/1‑91 CAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATGAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGAT < 2:1531006/91‑1 CAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGAT < 2:1139588/91‑1 CAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGGTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGAT < 2:201039/91‑1 AATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATC < 1:2962113/91‑1 AATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATC > 2:1310905/1‑91 AATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATC > 1:3411152/1‑91 AATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATC < 1:2962150/91‑1 ATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCT > 1:108829/1‑91 ATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCT > 1:2493269/1‑91 ATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCT > 1:2493743/1‑91 ATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCT < 1:1948189/91‑1 TAGGGCTTTTTTCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTT > 2:3097040/1‑91 TAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTT > 1:881017/1‑91 TAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTT > 2:249036/1‑91 AGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTT < 1:3751278/91‑1 AGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTT > 2:1345980/1‑91 AGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTT > 2:101147/1‑91 AGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTT > 1:1551436/1‑91 GGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT > 1:2207284/1‑91 GGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT < 2:546601/91‑1 GGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT > 1:2195700/1‑91 GGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTT > 2:3754552/1‑91 GGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGTTCTTTTT > 2:3498974/1‑91 GGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTT < 2:1281195/91‑1 GGCTTTTTGCTGACGCTAGTGCGCGATAAATAAGAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTGATGGCAGCGATCTTTTT < 2:1281038/91‑1 GCTTTTTTCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTT > 2:3328848/1‑91 CTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTA < 1:2269267/91‑1 CTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTA < 1:2269775/91‑1 TTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTAT < 1:2115241/91‑1 TTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTAT > 2:1928363/1‑91 TTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTAT > 2:3028427/1‑91 TTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTAT > 2:3218612/1‑91 TTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATA > 1:3206389/1‑91 AAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCC > 2:3146622/1‑91 AAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCC > 2:2915185/1‑91 AAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTA > 2:3353330/1‑91 GATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATT > 1:2372644/1‑91 ATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTG > 1:2079806/1‑91 ATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTG > 2:3904586/1‑91 ATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCCCACTAGCGTCAGCAACAAGCCCTCTTG > 2:183027/1‑91 TCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGT > 2:2349060/1‑91 ACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTT > 1:1626080/1‑91 ACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTT > 2:3858081/1‑91 CTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTT > 1:2109816/1‑91 CAATCATTCGTTTAATGGCAGCGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTAT > 2:3655689/1‑91 AATCATTCGTTTAATGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTctc > 2:1280358/1‑88 GATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTC < 1:149270/91‑1 GATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTC < 1:1134303/91‑1 GATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTC < 1:506214/91‑1 GATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTC < 2:3599277/91‑1 ATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCA < 1:996917/91‑1 ATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCA < 2:2682652/91‑1 ATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCA < 2:2861717/91‑1 ATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCA < 1:3403754/91‑1 ATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGAGTAAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTaca < 2:1272420/91‑4 TCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAT < 1:2709137/91‑1 TCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAT < 1:226868/91‑1 TCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAT < 1:1841339/91‑1 TCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAT < 2:2412342/91‑1 TCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAT < 1:800780/91‑1 CTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATA < 2:1430705/91‑1 CTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATA < 1:3230742/91‑1 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCTTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA < 1:1730802/91‑1 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCTTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA < 1:1730776/91‑1 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA < 2:3029621/91‑1 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA < 1:1511263/91‑1 TTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA < 2:1658026/91‑1 TTTTTTATATTCAACTTATTATTTATCGCGCACAAGCATAAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAA < 2:2014344/91‑1 TTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAA > 1:3713312/1‑91 TTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAG > 1:3223949/1‑91 TTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAG > 1:3658132/1‑91 TTTATATTCAACTTATTATTTATCGCGCACTAGAGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGT < 2:1236287/91‑1 TTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTT < 1:475211/91‑1 TTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTT > 1:1628802/1‑91 TTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTT < 1:195/91‑1 TTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTT < 1:691/91‑1 TTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTT > 1:9469/1‑91 TTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTT < 2:1335734/91‑1 TTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTT < 2:286097/91‑1 TTATATTCAACTTATTATTTATCGCGCAAAAGAAAAAAAAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTT < 2:1337695/91‑1 TATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTT < 1:423615/91‑1 TATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTT < 1:1481478/91‑1 TATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTT < 1:1708458/91‑1 TATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTT < 1:1422072/91‑1 ATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTA > 2:2707537/1‑91 ATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTA < 2:2830592/91‑1 TATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTAT < 1:2619243/91‑1 AACAATAGGGCTTTTTGCTGACGCTAGTGCGCGATAAATAATAAGTTGAATATAAAAAAGATCACTGCCAATCATTCGTTTAATGGCAGCGATCTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2201376‑2201275‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTAT > USA300TCH1516_ALE/2201326‑2201415 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |