BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2201275 =	169 (0.830)	13 (0.080)	10/136	NT	8.5%	intergenic (+5/+364)	kdpE/cshA	KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA
*	?	USA300TCH1516_ALE	2201326 =	135 (0.780)	13 (0.080)	10/136	NT	8.5%	intergenic (+56/+313)	kdpE/cshA	KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA

Only 100 of 263 total aligned reads displayed.

TTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATT  >  USA300TCH1516_ALE/2201236‑2201416

 tGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAATGATCTTTTTTatat                                                                                           <  2:1392839/91‑1 (MQ=255)

  ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATAtt                                                                                          >  2:1185033/1‑91 (MQ=255)

   gTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTc                                                                                         <  1:1329651/91‑1 (MQ=255)

    ttATCAAATGTTGCAGTGTAAAGAGAAATAATTAAATAAATAAGATCGTTGCCAATAAACGAATGATTGGCAGTGATCTTTTTTATATTCa                                                                                        <  2:406524/91‑1 (MQ=255)

    ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa                                                                                        >  2:1908908/1‑91 (MQ=255)

    ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa                                                                                        <  1:1641943/91‑1 (MQ=255)

       tCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACt                                                                                     <  2:3318237/91‑1 (MQ=255)

        cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt                                                                                    >  2:3413989/1‑91 (MQ=255)

        cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt                                                                                    >  1:2797635/1‑91 (MQ=255)

        cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt                                                                                    <  1:3593378/91‑1 (MQ=255)

        cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt                                                                                    >  2:1214576/1‑91 (MQ=255)

         aaaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtta                                                                                   <  2:3866290/91‑1 (MQ=255)

          aaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttat                                                                                  <  1:398585/91‑1 (MQ=255)

           aTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatt                                                                                 <  1:3857267/91‑1 (MQ=255)

           aTGTGGCAGTGGAAAGAGTACTAGTTAAATAAAAATGATCGCTGCCATTAACCGAATGATTGGCAGTGATCTTTTTTATATTCAACttagt                                                                                 <  2:1711422/91‑3 (MQ=255)

            tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta                                                                                >  2:2482533/1‑91 (MQ=255)

            tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta                                                                                >  2:2016587/1‑91 (MQ=255)

            tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta                                                                                <  1:2967378/91‑1 (MQ=255)

            tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACAAATGATCGGCAGAGATATATTTTATATTCAACcaatta                                                                                >  2:3198344/1‑91 (MQ=255)

            ggTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta                                                                                <  2:738192/90‑1 (MQ=255)

             gTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTtattat                                                                               <  2:1146866/91‑1 (MQ=255)

                gCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattta                                                                            >  1:1317686/1‑91 (MQ=255)

                   gTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGTAGTGATCTTTTTTATATTCAACTTATTATTTATcg                                                                         >  1:346636/1‑91 (MQ=255)

                      gAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCgcgc                                                                      >  2:2976352/1‑91 (MQ=255)

                       aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa                                                                     >  1:1046186/1‑91 (MQ=255)

                       aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa                                                                     >  2:1659752/1‑91 (MQ=255)

                       aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa                                                                     >  2:1227077/1‑91 (MQ=255)

                       aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa                                                                     >  1:1046509/1‑91 (MQ=255)

                        aaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCgcgccc                                                                    >  2:1159932/1‑89 (MQ=255)

                        aaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCAc                                                                    <  1:2645621/91‑1 (MQ=255)

                        aaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCAc                                                                    <  2:220118/91‑1 (MQ=255)

                          gagaAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTa                                                                  >  1:1519106/1‑91 (MQ=255)

                              aataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGt                                                              >  1:3371452/1‑91 (MQ=255)

                               ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc                                                             >  1:860251/1‑91 (MQ=255)

                                taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa                                                            <  1:3124500/91‑1 (MQ=255)

                                taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa                                                            >  1:2919586/1‑91 (MQ=255)

                                taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa                                                            <  1:1296042/91‑1 (MQ=255)

                                 aatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAg                                                           >  2:1513317/1‑91 (MQ=255)

                                  atTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGTACTAGCGTAAGc                                                          <  2:2679344/91‑1 (MQ=255)

                                  atTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGc                                                          <  2:325961/91‑1 (MQ=255)

                                   ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa                                                         >  1:1442009/1‑91 (MQ=255)

                                   ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa                                                         <  1:3657159/91‑1 (MQ=255)

                                   ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa                                                         <  1:1607324/91‑1 (MQ=255)

                                    taaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaa                                                        >  2:1296148/1‑91 (MQ=255)

                                      tATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaa                                                      >  1:3206389‑M1/2‑91 (MQ=255)

                                      aataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaa                                                      >  1:1120828/1‑91 (MQ=255)

                                      aataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaa                                                      <  1:2556136/91‑1 (MQ=255)

                                       ATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaaa                                                     >  2:1928363‑M1/1‑91 (MQ=255)

                                       ATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaaa                                                     >  2:3028427‑M1/1‑91 (MQ=255)

                                          aaaaagatcactgccaatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGcc                                                  >  2:3146622‑M2/49‑91 (MQ=255)

                                          AAAAAGATCGCTGCCATCAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTCTTATTTATCGCGCACTAGCGTCAGCAAAAAGcc                                                  <  2:1281038‑M1/91‑1 (MQ=255)

                                          AAAAAGAACGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGcc                                                  >  2:3498974‑M1/1‑91 (MQ=255)

                                           AAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGccc                                                 >  1:2195700‑M1/1‑91 (MQ=255)

                                           AAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGccc                                                 <  2:546601‑M1/91‑1 (MQ=255)

                                            AAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCt                                                >  2:101147‑M1/1‑91 (MQ=255)

                                              AGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAt                                              >  1:2493269‑M1/1‑91 (MQ=255)

                                               gatcactgccaatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAtt                                             >  1:2372644‑M2/44‑91 (MQ=255)

                                                ATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCACCTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTg                                            <  2:201039‑M1/91‑1 (MQ=255)

                                                 tcactgccaatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGt                                           >  2:2349060‑M2/42‑91 (MQ=255)

                                                 TCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGt                                           <  1:77318‑M1/91‑1 (MQ=255)

                                                 TCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGt                                           >  1:273421‑M1/1‑91 (MQ=255)

                                                  CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt                                          >  1:1426075‑M1/1‑91 (MQ=255)

                                                  CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt                                          <  1:2954151‑M1/91‑1 (MQ=255)

                                                  CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt                                          <  1:801423‑M1/91‑1 (MQ=255)

                                                   gCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttt                                         >  2:3701131/1‑91 (MQ=255)

                                                   gCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttt                                         >  1:1420583/1‑91 (MQ=255)

                                                   gCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttt                                         >  2:3602872/1‑91 (MQ=255)

                                                   actgccaatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttt                                         >  2:3858081‑M2/40‑91 (MQ=255)

                                                    ctgccaatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtttt                                        >  1:2109816‑M2/39‑91 (MQ=255)

                                                    cTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtttt                                        >  1:3346046/1‑91 (MQ=255)

                                                       ccATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTta                                     >  1:498496/1‑91 (MQ=255)

                                                        caatcattcgtttaatggcagcgatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtat                                    >  2:3655689‑M2/35‑91 (MQ=255)

                                                         aTTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtata                                   >  1:1736784/1‑91 (MQ=255)

                                                          ttAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATaa                                  >  1:1949382/1‑91 (MQ=255)

                                                              aCGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAAc                              <  1:62072/91‑1 (MQ=255)

                                                                gAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACAt                            >  1:532878/1‑91 (MQ=255)

                                                                     aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTGGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACGTGATAc                       <  2:971313/91‑1 (MQ=255)

                                                                     aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc                       <  1:1868826/91‑1 (MQ=255)

                                                                     aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc                       <  2:308237/91‑1 (MQ=255)

                                                                     aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGAACTAGCAAAAAAAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc                       <  2:2559330/91‑1 (MQ=255)

                                                                      ttGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACt                      >  2:623609/1‑91 (MQ=255)

                                                                        ggCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGa                    <  1:3765578/91‑1 (MQ=255)

                                                                         gCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGaa                   >  1:432717/1‑91 (MQ=255)

                                                                           aGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAAt                 <  1:1145647/91‑1 (MQ=255)

                                                                            gTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAAtt                <  1:1956287/91‑1 (MQ=255)

                                                                              gatcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTc              <  1:149270‑M2/79‑1 (MQ=255)

                                                                               atcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCa             <  2:2861717‑M2/80‑1 (MQ=255)

                                                                               atcttttttatATTCAACTTATTATTTATCGCGCACTAGAGTAAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGaaattaca             <  2:1272420‑M2/80‑4 (MQ=255)

                                                                                tcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAt            <  1:2709137‑M2/81‑1 (MQ=255)

                                                                                tcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAt            <  1:1841339‑M2/81‑1 (MQ=255)

                                                                                tcttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCAt            <  1:226868‑M2/81‑1 (MQ=255)

                                                                                  ttttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATaa          <  2:1658026‑M2/83‑1 (MQ=255)

                                                                                   tttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATaaa         >  1:3713312‑M2/8‑91 (MQ=255)

                                                                                    ttttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAg        >  1:3223949‑M2/7‑91 (MQ=255)

                                                                                      ttatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGtt      >  1:9469‑M2/5‑91 (MQ=255)

                                                                                      ttatATTCAACTTATTATTTATCGCGCAAAAGAAAAAAAAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGtt      <  2:1337695‑M2/87‑1 (MQ=255)

                                                                                       tatATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGttt     <  1:1708458‑M2/88‑1 (MQ=255)

                                                                                        atATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTa    >  2:2707537‑M2/3‑91 (MQ=255)

                                                                                         tATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTAt   <  1:2619243‑M2/90‑1 (MQ=255)

                                                                                          atTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGtttatt  <  1:2498094/91‑1 (MQ=255)

TTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTTCATAAAGTTTATT  >  USA300TCH1516_ALE/2201236‑2201416

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.