| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2201275 = | 169 (0.830) | 13 (0.080) | 10/136 | NT | 8.5% | intergenic (+5/+364) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA |
| ? | USA300TCH1516_ALE | 2201326 = | 135 (0.780) | intergenic (+56/+313) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA | |||||
Only 100 of 334 total aligned reads displayed.
TTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAA > USA300TCH1516_ALE/2201185‑2201365 | ttCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAAT > 1:218888‑M1/1‑91 (MQ=255) taaactttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatat < 2:2830592‑M1/2‑1 (MQ=255) aaactttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatata < 1:1708458‑M1/3‑1 (MQ=255) aaactttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatata < 1:1481478‑M1/3‑1 (MQ=255) cacaATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAA > 2:1815718‑M1/1‑91 (MQ=255) cacaATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAA > 2:1581919‑M1/1‑91 (MQ=255) cacaATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAA > 1:1133121‑M1/1‑91 (MQ=255) aactttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATaa < 2:1335734‑M1/4‑1 (MQ=255) acaATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAA > 1:270631‑M1/1‑91 (MQ=255) aaTGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAA > 2:3956249‑M1/1‑91 (MQ=255) ttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATaaaaaa < 2:1658026‑M1/8‑1 (MQ=255) ttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATaaaaaa < 2:3029621‑M1/8‑1 (MQ=255) ttatgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATaaaaaa < 1:1511263‑M1/8‑1 (MQ=255) ttatgaaatttcagtatcatgttcttataaaaaacaataaggctttttgctgacgctagtgcgcgataaataataagttgaatATaaaaaa < 1:1730802‑M1/8‑1 (MQ=255) aTGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAA < 1:3952503‑M1/91‑1 (MQ=255) aTGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAA < 2:3106257‑M1/91‑1 (MQ=255) gTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGA > 1:326883‑M1/1‑91 (MQ=255) gTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGATGCAGTGGAAAGAGAAATAATTAAATAAAAAAGA < 2:441862‑M1/91‑1 (MQ=255) atgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGa < 1:800780‑M1/10‑1 (MQ=255) tgtaatttcagtatcatgttcttataaaaaacaatagggctttttgcttactctagtgcgcgataaataataagttgaatATAAAAAAGAt < 2:1272420‑M1/11‑1 (MQ=255) tgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGAt < 2:2861717‑M1/11‑1 (MQ=255) tgaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGAt < 2:2682652‑M1/11‑1 (MQ=255) tCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGAT < 1:1298806‑M1/91‑1 (MQ=255) gaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATc < 2:3599277‑M1/12‑1 (MQ=255) cATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC < 1:2276116‑M1/91‑1 (MQ=255) cATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC < 1:3438957‑M1/91‑1 (MQ=255) aatGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC < 2:3405365‑M1/90‑1 (MQ=255) aTGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCg > 1:3284084/1‑91 (MQ=255) aTGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCg > 1:1248333/1‑91 (MQ=255) gAGGACGCAAAAGATATTATTAAAACACATCCACGCAATGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCt < 2:2632906/91‑1 (MQ=255) aGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTg < 1:786010/91‑1 (MQ=255) gACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGcc > 2:1209881/1‑91 (MQ=255) cGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCAt > 1:265775/1‑91 (MQ=255) cGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCAt < 1:1179305/91‑1 (MQ=255) gCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCAtt < 1:2618065/91‑1 (MQ=255) cAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTa > 2:1109173/1‑91 (MQ=255) cAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTa > 1:1629278/1‑91 (MQ=255) aaaGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTaaa > 1:2414323/1‑91 (MQ=255) aaGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcatt < 2:21300‑M1/91‑14 (MQ=255) aGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACg < 2:1397889/91‑1 (MQ=255) gATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGa < 2:1243540/91‑1 (MQ=255) atatTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGaa > 2:3876283/1‑91 (MQ=255) attattAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATg < 1:2171936/91‑1 (MQ=255) tattaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGAt > 2:3267011/1‑91 (MQ=255) tattaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGAt > 2:541603/1‑91 (MQ=255) attaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGAtt < 1:1841383/91‑1 (MQ=255) ataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTg > 2:3655689‑M1/58‑91 (MQ=255) aaaaCACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAAATAAATAAAAAAGATCactgccaatcattcgtttaatggc < 2:653294‑M1/91‑25 (MQ=255) agcacatcCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcag < 2:2532943‑M1/89‑27 (MQ=255) acacATCCCCGCATTGGTTATAAAATGTGACAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 2:2410245/91‑1 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagc < 2:919932‑M1/91‑28 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 1:2874023/91‑1 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 2:3159262/91‑1 (MQ=255) aaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt > 2:3858081‑M1/53‑91 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg > 1:1409924‑M2/1‑90 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg > 1:3537044‑M2/1‑90 (MQ=255) acaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTATATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTga < 2:3468925‑M2/91‑3 (MQ=255) acaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTga < 2:3335087‑M2/91‑3 (MQ=255) caagagggcttgttgctgacgctagtgggcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGAt > 2:183027‑M1/50‑91 (MQ=255) caTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgat > 2:792428‑M2/1‑88 (MQ=255) aTCCACGCATTGTTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGACAGTgatc > 2:2450587‑M2/1‑87 (MQ=255) cACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttt < 2:2328162‑M2/91‑8 (MQ=255) gggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCtttt > 2:2915185‑M1/45‑91 (MQ=255) aTTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttat < 2:3708043‑M2/91‑13 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATAtt > 1:1073213/1‑91 (MQ=255) gTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttatcttc < 2:105199‑M2/91‑17 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa > 2:1908908/1‑91 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa < 2:141650/91‑1 (MQ=255) tATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCaa > 1:1358596/1‑91 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt < 1:3593378/91‑1 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt > 1:473845/1‑91 (MQ=255) aaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttat < 1:336089/91‑1 (MQ=255) aTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatt < 2:1711388/91‑1 (MQ=255) aTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatt > 1:1586949/1‑91 (MQ=255) tGTTGCAGTGGACAGAGAAATAATTAAATAAAAAAGCTCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAGCctatta > 2:3198293/1‑91 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta > 2:2016587/1‑91 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta > 2:2482533/1‑91 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta < 1:2967378/91‑1 (MQ=255) gTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTtattat > 1:545655/1‑91 (MQ=255) tGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattt > 1:377152/1‑91 (MQ=255) aGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATc > 1:2013330/1‑91 (MQ=255) ggAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATcgcg > 1:2753643/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 1:1046186/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 1:3221676/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 2:1227077/1‑91 (MQ=255) aaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCgcgccc > 2:1159932/1‑89 (MQ=255) agagAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACt < 1:644806/91‑1 (MQ=255) aataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGt < 2:1978351/91‑1 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 2:224813/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 1:860251/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 2:2992007/1‑91 (MQ=255) taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa < 1:3124500/91‑1 (MQ=255) taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa < 1:3852628/91‑1 (MQ=255) aatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAg > 2:1513317/1‑91 (MQ=255) ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa < 1:3657159/91‑1 (MQ=255) taaataaaAAAGATCactgccaatcattcgtttaatggcagcgatcttttttatttaattatttctctttccactgcaacatttgataacc < 1:135293‑M1/91‑77 (MQ=255) aataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaa < 1:2556136/91‑1 (MQ=255) ataaaAAAGATCactgccaatcattcgtttaatggcagcgatcttttttatttaattatttctctttccactgcaacatttgataaccaat < 1:338762‑M1/91‑80 (MQ=255) ATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaaa < 1:2115241‑M1/91‑1 (MQ=255) ATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaaa > 2:3218612‑M1/1‑91 (MQ=255) | TTTCACAATGTCATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAA > USA300TCH1516_ALE/2201185‑2201365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |