| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2236031 | 141 (0.690) | 10 (0.060) | 6/142 | NT | 7.1% | intergenic (‑304/+43) | tdk/rpmE2 | Thymidine kinase/50S ribosomal protein L31 type B |
| ? | USA300TCH1516_ALE | = 2236051 | 138 (0.760) | intergenic (‑324/+23) | tdk/rpmE2 | Thymidine kinase/50S ribosomal protein L31 type B | |||||
AATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2235933‑2236031‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagctgtctGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTGACTCA < USA300TCH1516_ALE/2236051‑2235964 AATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAA > 1:574457/1‑91AATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAA < 1:3032/91‑1AATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAA < 1:1256269/91‑1AATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAA < 1:709172/91‑1AATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAA > 1:2077602/1‑91 ATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGGACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAA < 1:2505806/91‑1 ATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAA < 1:3170468/91‑1 ATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAA < 2:2753956/91‑1 TTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAG < 1:733770/91‑1 TATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCT < 1:2133953/91‑1 ATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTG < 1:182485/91‑1 ATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTG < 1:1322853/91‑1 TCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAGAAGCTGT > 1:1969858/1‑91 TCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGT > 2:2233763/1‑91 TCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGT > 2:780747/1‑91 CATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTC < 1:881870/91‑1 CATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTC > 2:307780/1‑91 ATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCT > 1:3234505/1‑91 ATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCT < 1:1086762/91‑1 ATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCT < 1:1086849/91‑1 TTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAG < 1:923952/91‑1 TTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAG < 1:392179/91‑1 TTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAG < 1:1102762/91‑1 TTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAG < 1:392027/91‑1 TTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAG < 1:1739740/91‑1 AGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAGACA < 1:2266118/91‑1 TCACTTCTTTGAACACAGTCGTAAGTATATACCCGTACTACGCTTATATATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAGACAGC < 1:1721043/91‑1 CTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTT < 1:3473612/91‑1 GAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTT < 2:905784/91‑1 TATAAATAAAAAAGCTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTG < 1:925353/91‑1 AAGCTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGT < 1:980609/91‑1 AAGCTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGT > 2:1094363/1‑91 AGCTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTTTTTTTTATTTTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTG > 2:2679437/1‑91 AGCTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTG > 1:878049/1‑91 AGCTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTG < 1:674809/91‑1 AGCTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTG < 2:2888631/91‑1 AGCTGTCTGCATCCTATAATGGAATTATAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTG > 2:2235635/1‑91 AGCTGTCTGCATCCTATAATGGAAATGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTTTGTTCAAAGAAGTG > 1:1608137/1‑91 CTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTGAC > 2:951332/1‑91 CTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTGAC > 1:1448164/1‑91 CTGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTGAC > 1:2652153/1‑91 TGTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTGACT > 2:1307381/1‑91 GTCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTGACTC < 1:151194/91‑1 TCTGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTGACTCA > 2:159568/1‑91 AATTTATCATTATGTATTAACAACATGGTATTGAGTCACTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2235933‑2236031‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagctgtctGCATCCTATAATGGAATTGTAGACAGCTTTTTTATTTATAAGCGTAGTAAGGGTATATACTTACGACTGTGTTCAAAGAAGTGACTCA < USA300TCH1516_ALE/2236051‑2235964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |