| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2245364 = | 180 (0.880) | 19 (0.100) | 10/144 | NT | 10.7% | intergenic (‑223/+113) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta |
| ? | USA300TCH1516_ALE | 2245398 = | 154 (0.840) | intergenic (‑257/+79) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta | |||||
TTAGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2245461‑2245364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTGA > USA300TCH1516_ALE/2245398‑2245487 TTAGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAG < 2:3738496/91‑1 TAGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGG > 1:1032106/1‑91 TAGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGG < 2:3181563/91‑1 TAGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGG < 2:3181894/91‑1 AGTTGAAAGATGATAAAATTTTGTTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGG < 2:3189191/91‑1 AGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGG < 1:481809/91‑1 AGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGG < 1:1867976/91‑1 AGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGG > 1:1902057/1‑91 AGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGG < 1:3194096/91‑1 AGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGG < 1:3190541/91‑1 GTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGA > 2:3607575/1‑91 GTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGA > 2:1703805/1‑91 GTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGA < 1:3916761/91‑1 TTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAG > 2:1352488/1‑91 TGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGC < 1:3111211/91‑1 TGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGC > 2:2475224/1‑91 TGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGC > 1:1609729/1‑91 TGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGC > 2:944368/1‑91 TGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGC < 2:3071455/91‑1 TGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGCGTCTAAAATTTATACGCTCCCCTTACAGTACTTGTGAGAGGGAGC > 2:841044/1‑91 GAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCG < 2:1217675/91‑1 GAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCG > 2:3942201/1‑91 GAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCG < 1:3838306/91‑1 GAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCG < 2:520660/91‑1 GAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCG > 2:3942222/1‑91 AAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATACAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGT > 2:2980318/1‑91 AAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGT < 1:1653769/91‑1 AAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGT > 2:321755/1‑91 TGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAA > 1:1906010/1‑91 TGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAA > 1:153612/1‑91 TATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATC > 1:3441773/1‑91 CTCCCCTTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAA > 1:210496/1‑91 CCCTTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTA > 1:1235712/1‑91 CCCTTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTA > 1:2696214/1‑91 CCCTTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTA > 1:3861609/1‑91 CCTTACAGAATTTGTGAGAGGGGGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAA > 2:2285327/1‑91 CTTGCAGAATTTGCGAGAGGGAGCGTATCAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAACTTTTATCATCTTTCAACTAAA > 2:1880515/1‑91 CTTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAA > 2:1880459/1‑91 CTTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAA > 2:3285003/1‑91 TTACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAA > 2:2040124/1‑91 TACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAG > 2:2214317/1‑91 TACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAG > 1:3194935/1‑91 TACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAG > 1:3194936/1‑91 TACAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGCCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAG > 2:796445/1‑91 CAGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTC > 2:3729666/1‑91 AGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCA > 1:792211/1‑91 AGAATTTGTGAGAGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCA > 1:727963/1‑91 GGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAAT < 1:714262/91‑1 GGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAAT < 2:391242/91‑1 AGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCG < 2:801170/91‑1 AGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCG > 1:3162476/1‑91 AGCGTATAAATTTTATACACGTGTCCTATTTAAAGCAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCG < 2:801194/91‑1 GCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGT > 1:2523112/1‑91 GCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGT < 1:2444150/91‑1 GCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTATCAACTAAAAGTCAAACAAAAAATTAATCGT > 1:3165749/1‑91 GCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTATCAACTAAAAGTCAAACAAAAAATTAATCGT > 1:3165638/1‑91 GCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTATCAACTAAAAGTCAAACAAAAAATTAATCGT > 1:3165786/1‑91 GTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTG < 1:2538909/91‑1 GTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTG < 1:969186/91‑1 GTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTG < 2:1890462/91‑1 GTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTG < 2:1890185/91‑1 GTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTG < 1:2367646/91‑1 TATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTGA < 2:3829768/91‑1 TTAGTTGAAAGATGATAAAATTTTATTCGGGCTCCTTTAAATAGGACACGTGTATAAAATTTATACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2245461‑2245364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTGA > USA300TCH1516_ALE/2245398‑2245487 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |