BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2245364 =	180 (0.880)	19 (0.100)	10/144	NT	10.7%	intergenic (‑223/+113)	pyrG/rpoE	CTP synthase/putative DNA‑directed RNA polymerase subunit delta
*	?	USA300TCH1516_ALE	2245398 =	154 (0.840)	19 (0.100)	10/144	NT	10.7%	intergenic (‑257/+79)	pyrG/rpoE	CTP synthase/putative DNA‑directed RNA polymerase subunit delta

Only 100 of 255 total aligned reads displayed.

TTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTGAA  >  USA300TCH1516_ALE/2245308‑2245488

 ttACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGtat                                                                                           <  1:2498206/91‑1 (MQ=255)

  gatgataaaattttattcgggctcctttaaataggacacgtgtataaaatttatACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGtata                                                                                          >  1:3441773‑M1/55‑91 (MQ=255)

   aCAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATaa                                                                                         <  2:2572321/91‑1 (MQ=255)

     aaCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAAt                                                                                       >  1:2704993/1‑91 (MQ=255)

      aCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTACGGGGCGCGTATAAAtt                                                                                      >  2:1097238/1‑91 (MQ=255)

      aCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGCGCGTATAAAtt                                                                                      >  1:3497401/1‑91 (MQ=255)

       cgtggATTTTTGCGTTATCATTTCTTGATTTACTCAAATAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAAttt                                                                                     <  2:1110975/87‑1 (MQ=255)

       cTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTAACAAATTCTGTAAGGGGAGCGTATAAAttt                                                                                     >  1:1013585/1‑91 (MQ=255)

          tGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTtat                                                                                  <  1:3687408/91‑1 (MQ=255)

          tGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTtat                                                                                  >  2:3948871/1‑91 (MQ=255)

          tGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTtat                                                                                  >  1:2537353/1‑91 (MQ=255)

            aTTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATac                                                                                <  2:1282394/91‑1 (MQ=255)

            aTTTATGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATac                                                                                >  1:3120008/1‑91 (MQ=255)

             tttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATaca                                                                               >  2:1689153/1‑91 (MQ=255)

             tttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATaca                                                                               >  1:1272955/1‑91 (MQ=255)

             tttattcgggctcctttaaataggacacgtgtataaaatttatACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATaca                                                                               >  1:153612‑M1/44‑91 (MQ=255)

              ttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTACGGGGAGCGTATAAATTTTATacac                                                                              >  2:3840675/1‑91 (MQ=255)

              ttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATacac                                                                              >  1:3940629/1‑91 (MQ=255)

               tttGCGTTATCATTTCTTGATTTACGCAATTAAATAAAAAAACGCTCCCTCGCCCCAATTCTGTAAGGGGAGCGTATAAATTTTATACACg                                                                             <  1:3912453/91‑1 (MQ=255)

                ttGCGTTATCATTTCTTGATTTACTCAATGAAATAAAAAAACGCTCCCTCTCGCAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgt                                                                            <  2:1443153/91‑1 (MQ=255)

                 tGCGTTATCATTTCTTGTTTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtg                                                                           >  2:1407798/1‑91 (MQ=255)

                 tGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtg                                                                           >  1:1016255/1‑91 (MQ=255)

                  gtgTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtgt                                                                          >  1:1536603/3‑91 (MQ=255)

                    gTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTcc                                                                        <  2:867155/91‑1 (MQ=255)

                    gTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTcc                                                                        <  2:744451/91‑1 (MQ=255)

                      tATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTa                                                                      >  1:1986754/1‑91 (MQ=255)

                      tATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTa                                                                      >  1:3666658/1‑91 (MQ=255)

                           tttCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTaa                                                                 >  2:2081340/1‑91 (MQ=255)

                              cTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAgg                                                              <  2:1764525/91‑1 (MQ=255)

                                tGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAg                                                            >  1:1936507/1‑91 (MQ=255)

                                 gATTTACTCAATTAAATAAAAAAACGCTCACTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGc                                                           >  2:3445254/1‑91 (MQ=255)

                                  aTTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGcc                                                          <  1:2387238/91‑1 (MQ=255)

                                  aTTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGcc                                                          >  1:321825/1‑91 (MQ=255)

                                   tttACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGccc                                                         >  2:1136500/1‑91 (MQ=255)

                                      aCTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGaa                                                      >  2:275453/1‑91 (MQ=255)

                                       cTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAAt                                                     >  2:2044528/1‑91 (MQ=255)

                                        tCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATa                                                    <  1:2555165/91‑1 (MQ=255)

                                        tCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATa                                                    >  1:2889650/1‑91 (MQ=255)

                                         cAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaa                                                   <  1:2262720/91‑1 (MQ=255)

                                          tgtataaaatttatacgctccccttacagaatttgtgagagggagcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaa                                                  >  1:1906010‑M2/49‑91 (MQ=255)

                                           aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa                                                 <  1:1066267/91‑1 (MQ=255)

                                           aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa                                                 <  1:915372/91‑1 (MQ=255)

                                             taaataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAAtt                                               <  2:908948/91‑1 (MQ=255)

                                             taaataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAAtt                                               <  2:658100/91‑1 (MQ=255)

                                               aataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAAtttt                                             <  1:2466213/91‑1 (MQ=255)

                                                ataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTa                                            <  2:1854308/91‑1 (MQ=255)

                                                ataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTa                                            >  2:1939853/1‑91 (MQ=255)

                                                ataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTa                                            <  1:2951447/91‑1 (MQ=255)

                                                ataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTa                                            <  2:485103/91‑1 (MQ=255)

                                                  aaaaaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatc                                          <  2:2022073/91‑1 (MQ=255)

                                                  aaaaaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatc                                          <  1:1614260/91‑1 (MQ=255)

                                                  aaaaaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatc                                          <  1:1769841/91‑1 (MQ=255)

                                                   aaaaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAACTTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatca                                         >  2:3048081/1‑91 (MQ=255)

                                                    aaaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATACATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatcat                                        >  2:3003791/1‑91 (MQ=255)

                                                       aaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCtt                                     <  1:2643612/91‑1 (MQ=255)

                                                        ACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCttt                                    >  2:321755‑M1/1‑91 (MQ=255)

                                                        ACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCttt                                    <  1:1653769‑M1/91‑1 (MQ=255)

                                                         CGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTc                                   >  2:3942201‑M1/1‑91 (MQ=255)

                                                         CGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTc                                   <  2:1217675‑M1/91‑1 (MQ=255)

                                                         CGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTc                                   <  1:3838306‑M1/91‑1 (MQ=255)

                                                          GCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCa                                  >  2:2475224‑M1/1‑91 (MQ=255)

                                                           ctccccttacagaatttgtgagagggagcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCaa                                 >  1:210496‑M2/32‑91 (MQ=255)

                                                            TCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAAc                                >  2:3607575‑M1/1‑91 (MQ=255)

                                                            TCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAAc                                >  2:1703805‑M1/1‑91 (MQ=255)

                                                             CCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACt                               >  1:1902057‑M1/1‑91 (MQ=255)

                                                              cccttacagaatttgtgagagggagcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTa                              >  1:1235712‑M2/29‑91 (MQ=255)

                                                              CCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTa                              <  2:3181894‑M1/91‑1 (MQ=255)

                                                               CTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTaa                             <  2:3738496‑M1/91‑1 (MQ=255)

                                                                tctcACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTaaa                            >  2:3144586/1‑91 (MQ=255)

                                                                  tacagaatttgtgagagggagcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAg                          >  1:3194935‑M2/25‑91 (MQ=255)

                                                                  tacagaatttgtgagagggagcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAg                          >  2:2214317‑M2/25‑91 (MQ=255)

                                                                  tacagaatttgtgagagggagcgtATAAATTTTATACACGTGCCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAg                          >  2:796445‑M2/25‑91 (MQ=255)

                                                                   cacaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGt                         <  1:3185357/91‑1 (MQ=255)

                                                                   cacaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGt                         >  2:848334/1‑91 (MQ=255)

                                                                     caAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTca                       >  2:1973633/1‑91 (MQ=255)

                                                                     agaatttgtgagagggagcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTca                       >  1:727963‑M2/22‑91 (MQ=255)

                                                                      aaaTTCTGTAAGGGGAGCATATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaa                      <  2:1183415/91‑1 (MQ=255)

                                                                        aTTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaac                    >  1:2961956/1‑91 (MQ=255)

                                                                        aTTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaac                    >  1:2849458/1‑91 (MQ=255)

                                                                         ttCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaaca                   >  1:45584/1‑91 (MQ=255)

                                                                          tCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaacaa                  >  2:2384743/1‑91 (MQ=255)

                                                                           cTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaacaaa                 <  1:607428/91‑1 (MQ=255)

                                                                             gTACGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCACCTTTCAACTCAAAGTCAAACaaaaa               >  2:947563/1‑91 (MQ=255)

                                                                             gTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACaaaaa               >  2:3516966/1‑91 (MQ=255)

                                                                             gTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACaaaaa               >  2:2439048/1‑91 (MQ=255)

                                                                              tAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACaaaaaa              <  1:316214/91‑1 (MQ=255)

                                                                              tAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACaaaaaa              >  2:593228/1‑91 (MQ=255)

                                                                               aaGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAAt             <  1:109895/91‑1 (MQ=255)

                                                                               aaGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGACAAACAAAAAAt             <  2:2959881/91‑1 (MQ=255)

                                                                                aGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAAtt            <  1:2519292/91‑1 (MQ=255)

                                                                                   ggagcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAAt         <  1:714262‑M2/84‑1 (MQ=255)

                                                                                     agcgtATAAATTTTATACACGTGTCCTATTTAAAGCAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCg       <  2:801194‑M2/86‑1 (MQ=255)

                                                                                      gcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGt      <  1:2444150‑M2/87‑1 (MQ=255)

                                                                                      gcgtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTATCAACTAAAAGTCAAACAAAAAATTAATCGt      >  1:3165638‑M2/5‑91 (MQ=255)

                                                                                        gtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTg    <  1:969186‑M2/89‑1 (MQ=255)

                                                                                        gtATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTg    <  2:1890185‑M2/89‑1 (MQ=255)

                                                                                          ataCATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTGaa  <  1:3181410/91‑1 (MQ=255)

                                                                                          ataAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTGaa  >  2:3293554/1‑91 (MQ=255)

                                                                                          ataAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTGaa  <  2:1649126/91‑1 (MQ=255)

                                                                                          ataAATTTTATACACGTGGCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTGaa  <  2:1262103/91‑1 (MQ=255)

TTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTAATCGTTGAA  >  USA300TCH1516_ALE/2245308‑2245488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.