| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2245371 | 168 (0.820) | 11 (0.060) | 6/144 | NT | 6.7% | intergenic (‑230/+106) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta |
| ? | USA300TCH1516_ALE | = 2245389 | 154 (0.840) | intergenic (‑248/+88) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta | |||||
CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2245274‑2245371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgctcccCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATAC < USA300TCH1516_ALE/2245389‑2245300 CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAA > 2:176888/1‑91CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAA > 1:2920838/1‑91CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAA < 2:1586883/91‑1 CGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAAC < 1:291329/91‑1 CGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAAC > 2:1652781/1‑91 GTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACG > 1:545542/1‑91 TTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGC > 2:1445920/1‑91 TTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGC < 2:3115136/91‑1 TTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGC < 1:1842816/91‑1 TTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGC > 1:3855139/1‑91 TTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGC < 1:1842682/91‑1 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT < 1:2846066/91‑1 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT > 1:1526859/1‑91 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT > 1:1526825/1‑91 TTCCATACGGCTATGTCACTATGTATATCATTTATAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT < 2:2718455/91‑1 TCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTC > 1:1105505/1‑91 TCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTC > 1:1080446/1‑91 CCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCC > 1:2417692/1‑91 CCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCC > 2:129594/1‑91 CATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC > 1:2333217/1‑91 CATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC > 1:617478/1‑91 CATACTCCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCACCC > 1:3069398/1‑91 CACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTTATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTG < 2:3047354/91‑1 TATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGG < 1:346450/91‑1 ATATCATTTACAACTTTGTTGTTTGCGTTATCGGTTCTTGAGGTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGG < 2:2545089/91‑1 ATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGG < 2:2834874/91‑1 ATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGG < 2:779480/91‑1 ATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGG < 2:779638/91‑1 TATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGA < 1:2076274/91‑1 TATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAAGTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGA < 2:196038/91‑1 ATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGT < 2:3690279/91‑1 TACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTT < 1:341846/91‑1 TACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTT < 1:341834/91‑1 ACGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAAT > 1:2280818/1‑91 CGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:855291/1‑91 CGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG < 1:256642/91‑1 CGCTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG < 1:990475/91‑1 CTCCCCTTGAAGAATGTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAAGGCAAAAATCAAAGTTGTGAATGAT < 2:2191786/91‑1 CTCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGAT < 2:3306616/91‑1 TCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATA > 2:1528084/1‑91 TCCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATA > 2:1528083/1‑91 CCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAACATCAAAGTTGCAAATGATAT > 2:2880202/1‑91 CCCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATAT > 1:3947855/1‑91 CCCTTACAGGATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATA < 2:3692903/91‑1 CCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATA > 1:3324689/1‑91 CCCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATA < 1:2429896/91‑1 CCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATAC < 2:2713810/91‑1 CCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATAC < 2:2299022/91‑1 CCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATAC < 2:2298766/91‑1 CCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATAC < 1:2046843/91‑1 CCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGA > 2:859463/1‑86 CCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGA < 1:859463/86‑1 CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2245274‑2245371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgctcccCTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATAC < USA300TCH1516_ALE/2245389‑2245300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |