| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2245371 | 168 (0.820) | 11 (0.060) | 6/144 | NT | 6.7% | intergenic (‑230/+106) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta |
| ? | USA300TCH1516_ALE | = 2245389 | 154 (0.840) | intergenic (‑248/+88) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta | |||||
Only 100 of 251 total aligned reads displayed.
TGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATT > USA300TCH1516_ALE/2245299‑2245478 | tttagttgaaagatgataaaattttattcgggctcctttaaataggacacgtgtataaaatttatACGCTCCCTCTCACAAATTCTGTAAg > 2:3285003‑M1/66‑91 (MQ=255)tttagttgaaagatgataaaagtttattcgggctcctttaaataggacacgtgtataaaattgatACGCTCCCTCTCGCAAATTCTGCAAg > 2:1880515‑M1/66‑91 (MQ=255) ttagttgaaagatgataaaattttattcgggctcctttaaataggacacgtgtataaaatttatACGCCCCCTCTCACAAATTCTGTAAgg > 2:2285327‑M1/65‑91 (MQ=255) gTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGg < 2:2713810‑M2/91‑2 (MQ=255) gTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGg < 2:2299022‑M2/91‑2 (MQ=255) tataTCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgg < 1:2429896‑M2/91‑3 (MQ=255) tagttgaaagatgataaaattttattcgggctcctttaaataggacacgtgtataaaatttatACGCTCCCTCTCACAAATTCTGTAAggg > 1:1235712‑M1/64‑91 (MQ=255) atatCATTTGCAACTTTGATGTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGggg > 2:2880202‑M2/1‑88 (MQ=255) cATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcg > 1:855291‑M2/1‑84 (MQ=255) cATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcg < 1:256642‑M2/91‑8 (MQ=255) cATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcg < 1:990475‑M2/91‑8 (MQ=255) ttACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGtat < 1:2498271/91‑1 (MQ=255) gatgataaaattttattcgggctcctttaaataggacacgtgtataaaatttatACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGtata > 1:3441773‑M1/55‑91 (MQ=255) aCAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATaa < 2:2572321/91‑1 (MQ=255) aaCTTTGGTTTTTGCGTTATCATTTCTTGATTTAGTTAATTAAATAAAAGTACGCTCCCTCTCACAGATTCTGTAAGGGGAGCGTATAAAt < 2:169643/91‑1 (MQ=255) aaCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAAt > 1:2704993/1‑91 (MQ=255) aCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTACGGGGCGCGTATAAAtt > 2:1097238/1‑91 (MQ=255) cTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTAACAAATTCTGTAAGGGGAGCGTATAAAttt > 1:1013585/1‑91 (MQ=255) tGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTtat < 1:3687408/91‑1 (MQ=255) tGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTtat > 1:2537353/1‑91 (MQ=255) gATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTtata > 2:2387908/1‑91 (MQ=255) aTTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATac < 1:1714322/91‑1 (MQ=255) aTTTATGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATac > 1:3120008/1‑91 (MQ=255) tttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATaca > 1:1272955/1‑91 (MQ=255) tttattcgggctcctttaaataggacacgtgtataaaatttatACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATaca > 1:153612‑M1/44‑91 (MQ=255) ttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTACGGGGAGCGTATAAATTTTATacac > 2:3840675/1‑91 (MQ=255) ttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATacac > 1:3940629/1‑91 (MQ=255) ttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATacac > 1:1544990/1‑91 (MQ=255) tttGCGTTATCATTTCTTGATTTACGCAATTAAATAAAAAAACGCTCCCTCGCCCCAATTCTGTAAGGGGAGCGTATAAATTTTATACACg < 1:3912453/91‑1 (MQ=255) ttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgt > 1:2004145/1‑91 (MQ=255) tGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtg > 1:1016255/1‑91 (MQ=255) gCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtgt > 2:1636742/1‑91 (MQ=255) gCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtgt > 2:2466145/1‑91 (MQ=255) gCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtgt < 1:2476847/91‑1 (MQ=255) gTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTcc < 2:1273874/91‑1 (MQ=255) gTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTcc < 2:744451/91‑1 (MQ=255) gTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTcc < 2:852789/91‑1 (MQ=255) gTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTcc < 2:867155/91‑1 (MQ=255) ttATCATTTCTTGA‑TTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTa < 2:1286318/91‑1 (MQ=255) tATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTa > 2:216410/1‑91 (MQ=255) tATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTa > 1:3666658/1‑91 (MQ=255) cTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAgg > 1:3593159/1‑91 (MQ=255) gATTTACTCAATTAAATAAAAAAACGCTCACTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGc > 2:3445254/1‑91 (MQ=255) tttACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGccc > 2:1136500/1‑91 (MQ=255) ttACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCg < 2:450370/91‑1 (MQ=255) ttACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCg < 1:1641043/91‑1 (MQ=255) aCTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGaa > 2:275453/1‑91 (MQ=255) tCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATa > 1:2889650/1‑91 (MQ=255) cAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaa < 1:2262720/91‑1 (MQ=255) aaTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaa < 1:3313136/91‑1 (MQ=255) aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa > 2:2055682/1‑91 (MQ=255) aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa < 1:915372/91‑1 (MQ=255) aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa < 1:1066267/91‑1 (MQ=255) ttAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAAt > 1:1918072/1‑91 (MQ=255) taaataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAAtt < 2:908948/91‑1 (MQ=255) taaataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAAtt < 2:658100/91‑1 (MQ=255) aataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAAtttt < 1:2466145/91‑1 (MQ=255) ataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTa < 2:485103/91‑1 (MQ=255) ataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTa < 1:2951447/91‑1 (MQ=255) taaaAAAACGCTCCCTCCCACAAATCCTGTAATGGGAGCGCATAAATTCTATACACGTGTCCTATTTACAGGAGCCCGAACAAAAtattat > 2:1433499/1‑91 (MQ=255) aaaaaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatc < 2:2022073/91‑1 (MQ=255) aaaaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAACTTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatca > 2:3048081/1‑91 (MQ=255) aaaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATACATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatcat > 2:3003822/1‑91 (MQ=255) aaaaCGCTCCCTCTCACAAATTCTGTAAGgggagcgtttttttatttaattgagtaaatcaagaaatgataacgcaaaaatcaaagttgta < 1:341834‑M2/91‑63 (MQ=255) aaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatcatc > 2:1764030/1‑91 (MQ=255) aaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCtt < 1:2643612/91‑1 (MQ=255) aCGCTCCCTCTCACAAATTCTGTAAGgggagcgtttttttatttaattgagtaaatcaagaaatgataacgcaaaaatcaaagttgtaaat < 2:3690279‑M2/91‑66 (MQ=255) ACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCttt > 2:321755‑M1/1‑91 (MQ=255) CGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTc > 2:3942201‑M1/1‑91 (MQ=255) CGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTc < 2:1217675‑M1/91‑1 (MQ=255) CGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTc < 1:3838306‑M1/91‑1 (MQ=255) GCTCCCTCTCACAAGTACTGTAAGGGGAGCGTATAAATTTTAGACGCGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCa > 2:841044‑M1/1‑91 (MQ=255) tCCCTCTCACAAATTCTGTAAGgggagcgtttttttatttaattgagtaaatcaagaaatgataacgcaaaaatcaaagttgtaaatgata < 1:2076274‑M2/91‑70 (MQ=255) TCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAAc > 2:3607575‑M1/1‑91 (MQ=255) cccTCTCACAAATTCTGTAAGgggagcgtttttttatttaattgagtaaatcaagaaatgataacgcaaaaatcaaagttgtaaatgatat < 2:779638‑M2/91‑71 (MQ=255) CCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACt > 1:1902057‑M1/1‑91 (MQ=255) CCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACt < 1:481809‑M1/91‑1 (MQ=255) CCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACt < 1:3194096‑M1/91‑1 (MQ=255) CCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTa < 2:3181563‑M1/91‑1 (MQ=255) tctcACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTaaa > 2:3144586/1‑91 (MQ=255) ctcACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTaaaa > 2:183243/1‑91 (MQ=255) cacaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAACGt > 2:109954/1‑91 (MQ=255) acaAATTCTGTAAGCGGAGCGTATAAATTTTATACACGTGTCCTTTTTAAAGGAGCCCGAATAAATTTCTATCATCTTTCAACTAAACGTc > 2:147687/1‑91 (MQ=255) acaAATGCTGTAAGGGGCGCGTATAAATTTTATCCACGTGTCCTATTTAAAGGAGCCCGAATATAATTTTATCATCTTTCAACTAAAAGTc > 2:2960876/1‑91 (MQ=255) caAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTca > 2:1973633/1‑91 (MQ=255) aaaTTCTGTAAGGGGAGCATATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaa < 2:1183415/91‑1 (MQ=255) aaTTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaa < 1:2296399/91‑1 (MQ=255) aTTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaac > 1:2849458/1‑91 (MQ=255) aTTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaac > 1:2961956/1‑91 (MQ=255) tCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaacaa < 1:444751/91‑1 (MQ=255) cTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaacaaa > 1:1805350/1‑91 (MQ=255) gTACGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCACCTTTCAACTCAAAGTCAAACaaaaa > 2:947563/1‑91 (MQ=255) gTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCACACaaaaa > 2:3516284/1‑91 (MQ=255) tAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACaaaaaa > 2:593228/1‑91 (MQ=255) tAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACaaaaaa < 1:316214/91‑1 (MQ=255) aaGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAAt < 1:109895/91‑1 (MQ=255) aaGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAAt > 1:656544/1‑91 (MQ=255) aaGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAAt < 1:197194/91‑1 (MQ=255) aGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCTGAATAAAATTTTATCATCTTGCAACTAAAAGTCAAACAAAAAAtt > 2:2512063/1‑91 (MQ=255) aGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAAtt > 2:1955096/1‑91 (MQ=255) | TGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATT > USA300TCH1516_ALE/2245299‑2245478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |