| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2248208 = | 209 (1.030) | 23 (0.120) | 10/150 | NT | 10.9% | intergenic (+2/+128) | coaW/USA300HOU_RS11505 | Type II pantothenate kinase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2248263 = | 182 (0.950) | intergenic (+57/+73) | coaW/USA300HOU_RS11505 | Type II pantothenate kinase/hypothetical protein | |||||
AATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2248302‑2248208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCAT > USA300TCH1516_ALE/2248263‑2248352 AATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTC < 1:3382042/91‑1 ATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCT > 2:627621/1‑91 TGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTT > 1:3199922/1‑91 GAACAATACGTATTCAAAACACTTAGACCATAAAATAAAGGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATTGTCTTTT < 2:3684450/91‑1 GAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT < 2:1548076/91‑1 GAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT < 2:1068657/91‑1 GAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT < 1:3417186/91‑1 GAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT < 1:3238755/91‑1 GAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT > 2:2763702/1‑91 GAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT < 2:3781663/91‑1 AAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCC > 1:2892780/1‑91 AAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCC > 2:161489/1‑91 AAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATCGTTCC > 2:3206385/1‑91 AAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATAGTTCC > 2:3206357/1‑91 AGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCAT > 1:2574649/1‑91 AGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTATTTTATTTTATGGTATAAGTGTTTTGAATACGTATTGTTCCAT > 2:1306486/1‑91 CCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTCTTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTA > 2:1694979/1‑91 CCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTA > 2:1690071/1‑91 CCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTA > 2:1689982/1‑91 CCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTA > 1:934689/1‑91 TTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTAT > 1:1417678/1‑91 TTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTAT > 2:1862582/1‑91 TATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATC > 2:2669130/1‑91 TATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTATAAGTGTTTTGAATACGTATTGTTCCATTTATTATC > 1:2607187/1‑91 atcTAGCGTTTATTTAAAACAACGCGCATATAACTGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTCCCATTTACTATCA > 2:2774327/4‑91 ATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCA > 2:1327011/1‑91 ATATAGCGTTTATTTAAAACAACGCGCATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCA > 1:1088821/1‑91 TATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGCGTTTTGAATACGTATTGTTCCATTTATTATCAC > 1:3243276/1‑91 ATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACT > 1:26024/1‑91 TAGCGTTTATTTAAAACAACGCGCATATAAATGGCCTTTTTTTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTT > 2:950289/1‑91 TAGCGTTTATTTAAAACAACGCGCATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCTTTTATTTTCACTT > 2:835087/1‑91 TAGCGTTTATTTAAAACAACGCGCATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTT > 2:2127789/1‑91 CGCGCATATAAATGGCCTTTTAGTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATT < 2:3192134/91‑1 CTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGT > 1:2859024/1‑91 CTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGT > 1:2859107/1‑91 TTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTT < 2:1693454/91‑1 TTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTCATTACTTACAACTCAATTCAATTAAAATGTAAGTTC > 2:3117158/1‑91 TTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCA < 1:2431407/91‑1 TATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCAT > 1:2608736/1‑91 TATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCAT > 1:2608657/1‑91 AATGGAACAATACGTATTCAAAACACTTAGACCATAAAATAAAAGGCCATTTATATAGCGTTTATTTAAAACAACGCGCATATAAATGGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2248302‑2248208‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTCCATTTATTATCACTTAATTACTTACAACTCAATTCAATTAAAATGTAAGTTCAT > USA300TCH1516_ALE/2248263‑2248352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |