| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2248208 = | 209 (1.030) | 23 (0.120) | 10/150 | NT | 10.9% | intergenic (+2/+128) | coaW/USA300HOU_RS11505 | Type II pantothenate kinase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2248263 = | 182 (0.950) | intergenic (+57/+73) | coaW/USA300HOU_RS11505 | Type II pantothenate kinase/hypothetical protein | |||||
Only 100 of 273 total aligned reads displayed.
ATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTC > USA300TCH1516_ALE/2248118‑2248298 | aTTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTtag‑aaaaatagaa > 1:3274246/1‑91 (MQ=255) taCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTtag‑aaaaataaaaggcc < 1:2516792/91‑5 (MQ=255) taCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGAGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAg < 2:286041/91‑1 (MQ=255) acttacattttaattgaattgagttgtaagtaattaagtgataataaatggaacaatacgtattcaaaacacttagaccataaaatAAAAg > 1:2859024‑M1/87‑91 (MQ=255) aCTGTGTTGCGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGa < 2:3442451/91‑1 (MQ=255) aCTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGa < 1:159227/91‑1 (MQ=255) gtTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCAtt < 2:2650621/91‑1 (MQ=255) gtTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCAtt < 1:324213/91‑1 (MQ=255) gtTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCAtt < 2:1532344/91‑1 (MQ=255) ttACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTCTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCAttt > 2:517324/1‑91 (MQ=255) gcgGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTatat > 2:766236/1‑91 (MQ=255) cgGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATg < 1:126452/91‑1 (MQ=255) cgGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATg > 1:1210563/1‑91 (MQ=255) cgGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATg > 1:3167320/1‑91 (MQ=255) cgGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAA‑AAAAAAAAAAAAAGACCATTTATATg < 2:1085020/91‑1 (MQ=255) cgGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTAATGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATg > 1:3945690/1‑91 (MQ=255) gTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATgcg > 2:582643/1‑91 (MQ=255) ttGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATgcgc < 1:3652641/91‑1 (MQ=255) tGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGcgcg > 1:3526187/1‑91 (MQ=255) tGCAAACCGTACTATATTGAAAACGGCGCATTTTCAGGTGCTATTGTTGCATTATATTTAG‑AAAAATAGAAAAATACCATTTATATGcgcg < 2:2428418/91‑1 (MQ=255) gCAAAGCGTACTATGTTGAAAACGGCGCATTGTCAGGTGCTATTGGTGCATTATATTGAG‑AAAAATAGAAAAAGACCATTTATATGCGCgt < 2:3333399/91‑1 (MQ=255) aaaCCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCgttg > 1:3484318/1‑91 (MQ=255) aaCCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCgttgt > 1:1008338/1‑91 (MQ=255) aaCCGTACTATGTTGAAAACGGCGCATTTTCAGGGGCTATTGTCGCATTATATCTAG‑AAAAATAGCAAAGGGCCATTTATATGCGCgttgt > 2:2326457/1‑91 (MQ=255) aCCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCgttgtt < 1:2355853/91‑1 (MQ=255) ccGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGttt < 1:633693/91‑1 (MQ=255) tACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaa < 1:889096/91‑1 (MQ=255) aCTATGTTGAAAACGGCGCATTTTCCGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCCCGTGGTTTtaaa > 2:3286399/1‑91 (MQ=255) aCTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaa > 1:3438059/1‑91 (MQ=255) aCTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaa < 1:746493/91‑1 (MQ=255) aCTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaa < 1:1663550/91‑1 (MQ=255) aTGTTGAAAACGGCGCACTTTCAGGTGCTATTGGCGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTtaaataa > 2:1742895/1‑91 (MQ=255) tGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGc < 2:1001727/91‑1 (MQ=255) aaaaCGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCta < 2:3746422/91‑1 (MQ=255) aagtgaaaataaaaggaacaatacgtattcaaaacacttagaccataaaatAAAAGGCCATTTATATGCGCGTTGTTTTAAATAAACGCta > 2:835087‑M1/52‑91 (MQ=255) aaaCGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCtat > 2:2475255/1‑91 (MQ=255) aaaCGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATG‑GCGTTTATTTAAAACAACGcgcat < 2:1507415/91‑5 (MQ=25) aaCGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCtata < 2:565234/91‑1 (MQ=255) cGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCtatata < 2:576608/91‑1 (MQ=255) ggCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATaa > 1:1693454/1‑91 (MQ=255) gataataaatggaacaatacgtattcaaaacacttataccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCtatata > 1:2607187‑M1/48‑91 (MQ=255) ataataaatggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATaa > 1:1417678‑M1/47‑91 (MQ=255) cgcATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATGAAt > 1:3061368/1‑91 (MQ=255) gcATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATg > 1:2753179/1‑91 (MQ=255) cATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATgg < 2:3492948/91‑1 (MQ=255) cATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATgg < 1:904908/91‑1 (MQ=255) cATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATgg < 2:2482983/91‑1 (MQ=255) cATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATgg > 2:3828036/1‑91 (MQ=255) taaatggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATgg > 2:1689982‑M1/43‑91 (MQ=255) taaatggaacaatacgtattcaaaacacttagaccataaaagAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATgg > 2:1694979‑M1/43‑91 (MQ=255) aTTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGc > 2:2393489/1‑91 (MQ=255) aTTTTAAGGTGCTATTGGTGCATTATATTTAA‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGc < 2:2309749/91‑1 (MQ=255) tttCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGTGCGTTGTTTTAAATAAACGCTATATAAATGGCCt < 1:2106306/91‑1 (MQ=255) tgtCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCt < 1:3907973/89‑1 (MQ=255) ttCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtt < 2:3920073/91‑1 (MQ=255) ttCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtt < 1:1063024/91‑1 (MQ=255) ttCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtt < 1:1918574/91‑1 (MQ=255) ttCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtt < 1:961111/91‑1 (MQ=255) atggaacaatacgtattcaaaacacttataccataaaatAAAATACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCt > 2:1306486‑M1/40‑91 (MQ=255) tCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttt < 2:3312115/91‑1 (MQ=255) tCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTGAAATAAACGCTATATAAATGGCCttt < 2:2249306/91‑1 (MQ=255) ggaacaatacgtattcaaaacacttagaccataaaatAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttt > 1:2892780‑M1/38‑91 (MQ=255) ggTGCTATTGGTGCATTATATTTAGAAAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCtttta > 2:3197393/1‑91 (MQ=255) ggTGCTATTGGTGCAATATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttac > 2:1588038/1‑90 (MQ=255) gTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttatt < 2:2151999/91‑1 (MQ=255) tGCTATTGGTGCATTATATTTAG‑GTAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCttttattt < 1:2395393/91‑1 (MQ=255) tATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTtttattttat < 1:3285026/91‑1 (MQ=255) aTTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATg > 2:1845077/1‑91 (MQ=255) aTTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATg > 1:674689/1‑91 (MQ=255) aTTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATg < 2:3243752/91‑1 (MQ=255) ggTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTc > 1:2567425/1‑91 (MQ=255) ggTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTc < 2:1238937/91‑1 (MQ=255) ggTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTc < 2:1403430/91‑1 (MQ=255) gTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCt < 2:3166806/91‑1 (MQ=255) gTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCt < 1:245229/91‑1 (MQ=255) cATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAg < 2:1375064/91‑1 (MQ=255) cATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATGTTATGGTCTAAg > 1:191071/1‑91 (MQ=255) tataTTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtgt > 2:3941862/1‑91 (MQ=255) tataTTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtgt > 2:1445750/1‑91 (MQ=255) tataTTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAgtgt > 1:1127890/1‑91 (MQ=255) atTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGtttt > 2:1628249/1‑91 (MQ=255) atTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGtttt > 1:2153708/1‑91 (MQ=255) atTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGtttt > 2:3952177/1‑91 (MQ=255) atTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGtttt < 1:2619893/91‑1 (MQ=255) ttAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGa < 1:1571471/91‑1 (MQ=255) tag‑aaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGaa < 2:2766429/91‑1 (MQ=255) ag‑aaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGATCTAAGTGTTTTGAAt > 2:3780317/1‑91 (MQ=255) g‑aaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATa > 2:3627837/1‑91 (MQ=255) g‑aaaaatagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGATATATAAATAGCCTTTTATTTTATGATCTAAGAGTTTTGAATa > 2:2604446/1‑91 (MQ=255) atagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTAt < 2:1923526/91‑1 (MQ=255) atagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTAt < 2:277645/91‑1 (MQ=255) atagaaaaaGACCAGTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTAt < 1:3565698/91‑1 (MQ=255) tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTAtt < 1:3087736/91‑1 (MQ=255) tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTAtt > 2:1785217/1‑91 (MQ=255) tagaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTAtt < 1:1477098/91‑1 (MQ=255) gaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGt > 2:3584870/1‑91 (MQ=255) gaaaaaGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGt > 2:1870018/1‑91 (MQ=255) AAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTc < 1:3417186‑M1/91‑1 (MQ=255) AAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTc < 2:1068657‑M1/91‑1 (MQ=255) AAAAGACAATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCCTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTc < 2:3684450‑M1/91‑1 (MQ=255) | ATTATACTGTGTTACGCGGTTGCAAACCGTACTATGTTGAAAACGGCGCATTTTCAGGTGCTATTGGTGCATTATATTTAG‑AAAAATAGAAAAAGACCATTTATATGCGCGTTGTTTTAAATAAACGCTATATAAATGGCCTTTTATTTTATGGTCTAAGTGTTTTGAATACGTATTGTTC > USA300TCH1516_ALE/2248118‑2248298 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |