| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2259385 = | 215 (1.060) | 19 (0.110) | 9/140 | NT | 9.8% | intergenic (‑30/+642) | USA300HOU_RS11560/USA300HOU_RS11565 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2259420 = | 162 (0.910) | intergenic (‑65/+607) | USA300HOU_RS11560/USA300HOU_RS11565 | hypothetical protein/hypothetical protein | |||||
AAATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2259484‑2259385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagtgtttctTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGA > USA300TCH1516_ALE/2259420‑2259508 AAATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCAT < 2:1615216/91‑1AAATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCAT < 2:297753/91‑1 AATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATA < 1:1212886/91‑1 AATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATA > 1:3760611/1‑91 ATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCTTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAG < 1:1910154/91‑1 ATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAG < 1:1823079/91‑1 TGCGATTTTAATCGCATTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATATAATTCATAGT > 1:3589786/1‑91 TGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAGACACTAAAAGAATGTAATTCATAGT > 1:3689934/1‑91 TGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGT > 2:2101316/1‑91 GCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTG < 2:1895177/91‑1 GCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTG > 2:512305/1‑91 GCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTG > 1:1290613/1‑91 CGATCAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGT < 1:3294978/91‑1 GATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTT > 2:372619/1‑91 GATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTT > 2:2891953/1‑91 GATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTT < 2:2827084/91‑1 ATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTT < 1:376108/91‑1 ATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTT > 2:2098332/1‑91 ATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTT < 1:376109/91‑1 ATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAAAACTAAAAGAATGTAATTCATAGTGTTT < 1:1503420/91‑1 TTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAACGAATGTAATTCATAGTGTTTC > 2:3114660/1‑91 TTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTC > 2:3114404/1‑91 TTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTC > 1:444726/1‑91 TTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTC > 2:1902777/1‑91 TTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACCGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTC > 2:1334268/1‑91 tttAATCGCGGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT > 1:1982637/4‑91 tttAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT > 1:3940635/4‑91 TAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT > 2:1069011/1‑91 TAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT < 1:2399483/91‑1 TAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT < 2:119787/91‑1 TAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT < 1:2768482/91‑1 TAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGACCAACTGCATAAGAAACACTAAAAGAATGTAATTCATACAGTTTCT > 2:603005/1‑91 TAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCCTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT < 1:3945346/91‑1 GCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGA > 1:2618095/1‑91 GCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGA > 1:1829260/1‑91 AGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATCCGAACAACTGTATACCCTTTGTTCACTGCGATTGTA > 2:370659/1‑91 AGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTAGGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTA > 2:888688/1‑91 AAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGAACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAAT > 1:3534009/1‑91 ACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCG > 2:2297588/1‑91 ACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCG > 1:1566161/1‑91 CACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGC > 1:537823/1‑91 CACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGC > 1:535625/1‑91 CACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGC > 1:1144148/1‑91 CACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGC > 1:360188/1‑91 CACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGC > 1:2291556/1‑91 CACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGCATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGC > 1:3137763/1‑91 CTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCAT > 2:93551/1‑91 CTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCAT > 1:2562577/1‑91 CTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCAT > 1:562627/1‑91 TAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATT > 1:3664070/1‑91 AAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTT > 1:2980874/1‑91 ATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATA > 1:2705085/1‑91 TAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTGACTGCGATTTTAATCGCATTTCCTATAACATTGTAGC < 1:3337894/91‑1 TAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGC < 1:1420729/91‑1 AGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCG < 1:1458610/91‑1 AGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCG < 2:786290/91‑1 GTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTCGCGC > 2:1029768/1‑91 GTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGC > 2:1938524/1‑91 GTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGC > 1:3249748/1‑91 GTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGC < 1:1099771/91‑1 GTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGC > 1:2272696/1‑91 GTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGC > 2:532318/1‑91 GTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCC < 2:1313844/91‑1 GTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCC > 1:1345549/1‑91 GTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCC < 1:1868647/91‑1 TTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCA > 1:2198842/1‑91 TTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAG < 1:2905435/91‑1 TTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAG < 2:2366962/91‑1 TCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATATCATTGTCGCGCCCAGG < 2:3617496/91‑1 TCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGG < 1:3279126/91‑1 TCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGG < 2:3032102/91‑1 TCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGG < 2:3032075/91‑1 TCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGG < 2:1724498/91‑1 TCTTATGCAGTTGGACGCGTATCCGAACAACTGTATACCCTTTGTTCACGGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGG < 2:3002887/91‑1 CTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGA < 1:2153326/91‑1 CTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGA < 2:3741928/91‑1 CTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGA < 2:3741914/91‑1 CTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGA < 1:1489211/91‑1 CTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGA < 1:2153011/91‑1 CTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGA < 1:342697/91‑1 CTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGA < 2:1094883/91‑1 AAATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2259484‑2259385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagtgtttctTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGA > USA300TCH1516_ALE/2259420‑2259508 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |