New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2259385 =215 (1.060)19 (0.110) 9/140 NT 9.8% intergenic (‑30/+642) USA300HOU_RS11560/USA300HOU_RS11565 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE 2259420 = 162 (0.910)intergenic (‑65/+607) USA300HOU_RS11560/USA300HOU_RS11565 hypothetical protein/hypothetical protein

Only 100 of 308 total aligned reads displayed.

CATTATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTA  >  USA300TCH1516_ALE/2259295‑2259475
                                                                                          |                                                                                          
cATTATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTa                                                                                            <  1:508885/91‑1 (MQ=255)
 tcctgggcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAg                                                                                           <  1:342697‑M1/2‑1 (MQ=255)
 tcctgggcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAg                                                                                           <  1:2153326‑M1/2‑1 (MQ=255)
 aTTATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAg                                                                                           >  2:3790692/1‑91 (MQ=255)
 aTTATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAg                                                                                           <  2:43116/91‑1 (MQ=255)
  cctgggcgctacaatgttataggaaatgcgattaaaatcgccgtgaacaaagggtatacagttgttcggatacgcgtccaactgcataAGa                                                                                          <  2:3002887‑M1/3‑1 (MQ=255)
  cctgggcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGa                                                                                          <  2:3032075‑M1/3‑1 (MQ=255)
   tATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGaa                                                                                         >  2:78911/1‑91 (MQ=255)
   tATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGCCATCTTAATACTCCTTAACCTGAATAAATTTTAGaa                                                                                         >  2:2959202/1‑91 (MQ=255)
   ctgggcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGaa                                                                                         <  2:2366962‑M1/4‑1 (MQ=255)
   ctgggcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGaa                                                                                         <  1:2905435‑M1/4‑1 (MQ=255)
     tGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAac                                                                                       >  1:218323/1‑91 (MQ=255)
     gggcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAac                                                                                       <  2:1313844‑M1/6‑1 (MQ=255)
      gATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAaca                                                                                      >  1:3106086/1‑91 (MQ=255)
        cgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACt                                                                                    <  1:1458610‑M1/9‑1 (MQ=255)
         tCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTa                                                                                   >  1:3195368/1‑91 (MQ=255)
         tCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTa                                                                                   >  2:1065629/1‑91 (MQ=255)
         gctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTa                                                                                   <  1:1420729‑M1/10‑1 (MQ=255)
         gctacaatgttataggaaatgcgattaaaatcgcagtcaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTa                                                                                   <  1:3337894‑M1/10‑1 (MQ=255)
          ccAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTAt                                                                                  >  1:2969985/1‑91 (MQ=255)
            aaCGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGa                                                                                <  2:2492284/91‑1 (MQ=255)
            aaCGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGa                                                                                >  1:3720624/1‑91 (MQ=255)
               ggTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAAtt                                                                             >  1:3261724/1‑91 (MQ=255)
               ggTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAAtt                                                                             <  1:3815787/91‑1 (MQ=255)
                 ttATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTAc                                                                           <  1:3538130/91‑1 (MQ=255)
                 ttATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTAc                                                                           <  1:1854978/91‑1 (MQ=255)
                  tataTCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGACTTACa                                                                          <  2:1878352/91‑1 (MQ=255)
                   atatCCACAAAAAAAAAAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACAt                                                                         <  2:1721496/91‑1 (MQ=255)
                     atCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTc                                                                       <  2:3261761/91‑1 (MQ=255)
                     atCCACAATTCAACCAAAAATAATTCGTGTCTGCTGTCATCTTAATACTCCTTAACCTGAATATATTTTAGAAACACTATGAATTACATTc                                                                       >  2:2561779/1‑91 (MQ=255)
                        cacaAATCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCttt                                                                    <  2:848441/91‑1 (MQ=255)
                          caATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTa                                                                  <  2:1844417/91‑1 (MQ=255)
                          caATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTa                                                                  >  1:3489884/1‑91 (MQ=255)
                          caATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTa                                                                  >  2:1568661/1‑91 (MQ=255)
                            aTTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAgt                                                                <  1:2691781/91‑1 (MQ=255)
                            aTTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAgt                                                                >  1:3623222/1‑91 (MQ=255)
                            aTTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAgt                                                                <  2:1469346/91‑1 (MQ=255)
                             ttCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAgtg                                                               >  1:2523135/1‑91 (MQ=255)
                             gcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatgcgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAgtg                                                               >  1:3137763‑M1/62‑91 (MQ=255)
                              tCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAgtgt                                                              <  2:197878/91‑1 (MQ=255)
                              cgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAgtgt                                                              >  2:2297588‑M1/61‑91 (MQ=255)
                               cAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGtt                                                             <  2:3820475/91‑1 (MQ=255)
                                 aCCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTc                                                           >  1:3864098/1‑91 (MQ=255)
                                 aCCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTc                                                           <  1:2661882/91‑1 (MQ=255)
                                 aCCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTc                                                           >  1:835259/1‑91 (MQ=255)
                                  ccAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCt                                                          <  1:2471372/91‑1 (MQ=255)
                                  ccAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCt                                                          <  1:1936388/91‑1 (MQ=255)
                                  ccAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCt                                                          <  1:1339858/91‑1 (MQ=255)
                                    aaaaaTAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTa                                                        >  2:1634074/1‑91 (MQ=255)
                                    aaaaaTAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTa                                                        >  2:1401673/1‑91 (MQ=255)
                                     aaaaTAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTAt                                                       >  1:3396778/1‑91 (MQ=255)
                                      aaaTAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATg                                                      <  2:2405789/91‑1 (MQ=255)
                                       tcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGc                                                     >  1:2618095‑M1/52‑91 (MQ=255)
                                       tcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGc                                                     >  1:1829260‑M1/52‑91 (MQ=255)
                                       aataatTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGc                                                     <  2:3167566/91‑1 (MQ=255)
                                        ataatTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCa                                                    <  1:1774059/91‑1 (MQ=255)
                                          aatTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGt                                                  <  1:1651006/91‑1 (MQ=255)
                                           atTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGtt                                                 >  2:3873456/1‑91 (MQ=255)
                                            ttCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGTATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTg                                                <  2:3123567/91‑1 (MQ=255)
                                            ttCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTg                                                >  1:1531330/1‑91 (MQ=255)
                                            ttCGTGTCTGCTGTCATCTTAATACTACTTAACCTGAATAAATTTTAGAAACACTATGAATTACACTCATTCAGTGTTTCTTATGCAGttc                                                >  2:3235078/1‑90 (MQ=255)
                                             tCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTgg                                               <  2:3578304/91‑1 (MQ=255)
                                              cGTTTCTGCTGTCATCTTAATTCTCCTTAACCTGAGTAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGa                                              <  2:3311907/91‑1 (MQ=255)
                                                 ttCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGAcgc                                           <  1:623351/91‑1 (MQ=255)
                                                    tgctgTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACGTTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTa                                        <  2:579005/91‑1 (MQ=255)
                                                     gctgTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTAt                                       <  2:1248637/91‑1 (MQ=255)
                                                     gctgTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTAt                                       >  1:2000599/1‑91 (MQ=255)
                                                      ctgTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATg                                      <  1:375053/91‑1 (MQ=255)
                                                      ctgTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGAAGCGTATg                                      >  2:881824/1‑91 (MQ=255)
                                                        gTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCg                                    >  1:2796673/1‑91 (MQ=255)
                                                        gTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCg                                    >  2:3738547/1‑91 (MQ=255)
                                                             cTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGaacac                               >  2:1127339/1‑90 (MQ=255)
                                                              ttAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGaacaac                              >  2:1354552/1‑91 (MQ=255)
                                                              ttAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGaacaac                              <  2:2044967/91‑1 (MQ=255)
                                                                  tACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGta                          <  2:772502/91‑1 (MQ=255)
                                                                   aCTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGtat                         <  1:765456/91‑1 (MQ=255)
                                                                     tCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATAc                       >  1:337416/1‑91 (MQ=255)
                                                                     tCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATAc                       >  1:1163395/1‑91 (MQ=255)
                                                                      ccTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATAcc                      >  2:49464/1‑91 (MQ=255)
                                                                       cTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATAccc                     <  2:2934328/91‑1 (MQ=255)
                                                                       cTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATAccc                     >  2:923165/1‑91 (MQ=255)
                                                                        ttAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCt                    >  1:221447/1‑91 (MQ=255)
                                                                         tAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCtt                   >  1:227878/1‑91 (MQ=255)
                                                                            ccTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGt                <  1:3834621/91‑1 (MQ=255)
                                                                             cTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGtt               <  2:72644/91‑1 (MQ=255)
                                                                              tGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTc              <  1:1029084/91‑1 (MQ=255)
                                                                               gAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCa             <  2:1143965/91‑1 (MQ=255)
                                                                                aaTAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCAc            >  1:97923/1‑91 (MQ=255)
                                                                                aaTAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCAc            >  2:3404922/1‑91 (MQ=255)
                                                                                  tAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTg          <  1:1597263/91‑1 (MQ=255)
                                                                                     aTTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGa       <  1:95108/91‑1 (MQ=255)
                                                                                      ttttAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAt      >  2:2791044/1‑91 (MQ=255)
                                                                                      ttttAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAt      >  2:1753128/1‑91 (MQ=255)
                                                                                      ttttAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAt      >  1:1676871/1‑91 (MQ=255)
                                                                                        ttAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAtta    <  2:2251304/91‑2 (MQ=255)
                                                                                        ttAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAtta    <  2:2139033/91‑2 (MQ=255)
                                                                                        ttAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAtta    <  1:556494/91‑2 (MQ=255)
                                                                                        ttAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAtta    <  1:2133169/91‑2 (MQ=255)
                                                                                         tAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAtttt   <  1:114338/91‑1 (MQ=255)
                                                                                          AGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGAGGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTa  <  1:3945346‑M1/91‑1 (MQ=255)
                                                                                          |                                                                                          
CATTATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTA  >  USA300TCH1516_ALE/2259295‑2259475

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.