New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2307807 =151 (0.740)20 (0.120) 11/128 NT 13.7% intergenic (‑171/+65) USA300HOU_RS11770/fecD_2 hypothetical protein/Fe(3+) dicitrate transport system permease protein FecD
?USA300TCH1516_ALE 2307852 = 131 (0.810)intergenic (‑216/+20) USA300HOU_RS11770/fecD_2 hypothetical protein/Fe(3+) dicitrate transport system permease protein FecD

Only 100 of 106 total aligned reads displayed.

GTGCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2307912‑2307807
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAGGA  >  USA300TCH1516_ALE/2307852‑2307941
                                                                                                                                                                                                    
GTGCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTG                                                                                                           >  2:1167081/1‑91
GTGCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTG                                                                                                           >  2:3581789/1‑91
GTGCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACAGATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTG                                                                                                           <  2:3048093/91‑1
 TGCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGT                                                                                                          >  1:850513/1‑91
 TGCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGT                                                                                                          >  2:2173244/1‑91
 TGCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGT                                                                                                          >  1:594151/1‑91
 TGCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGT                                                                                                          >  2:485251/1‑91
  GCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTA                                                                                                         <  2:3860769/91‑1
  GCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTA                                                                                                         >  2:2954480/1‑91
   CACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTAC                                                                                                        >  2:1393523/1‑91
    ACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACT                                                                                                       <  1:2181684/91‑1
    ACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACT                                                                                                       <  2:34309/91‑1
    ACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACT                                                                                                       <  1:265078/91‑1
    ACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACT                                                                                                       <  1:265415/91‑1
     CCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTT                                                                                                      <  2:385579/91‑1
      CATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTA                                                                                                     >  1:895587/1‑91
      CATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTA                                                                                                     <  1:1430118/91‑1
      CATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTA                                                                                                     <  1:1430096/91‑1
      CATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTA                                                                                                     <  1:3783279/91‑1
      CATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTA                                                                                                     <  2:1775157/91‑1
       ATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAA                                                                                                    >  1:992561/1‑91
        TACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAAC                                                                                                   <  2:2964516/91‑1
        TACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAAC                                                                                                   >  1:306686/1‑91
        TACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAAC                                                                                                   >  2:338523/1‑91
         ACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACC                                                                                                  >  2:834135/1‑91
         ACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACC                                                                                                  >  1:2431053/1‑91
          tTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCT                                                                                                 <  2:3642466/90‑1
          CTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCT                                                                                                 >  2:2443528/1‑91
          CTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCT                                                                                                 >  2:127851/1‑91
           TTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTT                                                                                                <  2:3124458/91‑1
           TTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTT                                                                                                >  1:2613146/1‑91
            TCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTT                                                                                               <  1:3521512/91‑1
            TCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTT                                                                                               <  2:2880008/91‑1
            TCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTT                                                                                               <  1:3521623/91‑1
            TCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTT                                                                                               >  1:379806/1‑91
            TCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTT                                                                                               <  2:1934813/91‑1
             CTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTT                                                                                              >  2:1611930/1‑91
             CTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTT                                                                                              >  2:1612161/1‑91
              TTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTT                                                                                             <  1:56466/91‑1
              TTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTT                                                                                             >  2:3365403/1‑91
              TTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTT                                                                                             <  1:1636927/91‑1
              TTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTT                                                                                             <  1:882629/91‑1
               TAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTT                                                                                            >  2:3345811/1‑91
               TAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTT                                                                                            >  1:1306326/1‑91
               TAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAACCAGTAATTGTACTTAACCTTTTTT                                                                                            <  1:943134/91‑1
                                                                 AAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTTGTTATTTCATTCTTCGTACTAATATTAAGAA                                          >  2:2986209/1‑91
                                                                 AAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAA                                          >  1:308027/1‑91
                                                                   GGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATACTATTAAGAAGT                                        >  2:578548/1‑91
                                                                   GGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGT                                        >  1:2209274/1‑91
                                                                   GGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGT                                        >  1:3606133/1‑91
                                                                   GGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGT                                        >  2:537060/1‑91
                                                                    GTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTA                                       >  1:105668/1‑91
                                                                      TAAGTACGAAATCAGTAATTGTACCTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTAGTAATAAGATTAAGAAGTATt                                     >  2:725871/1‑90
                                                                       AAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGG                                    >  1:2256310/1‑91
                                                                       AAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGG                                    >  1:2256152/1‑91
                                                                       AAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGG                                    >  1:426185/1‑91
                                                                       AAGTACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTACGTAATAATATTAAGAAGTATGG                                    >  2:59359/1‑91
                                                                           ACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCA                                >  1:262806/1‑91
                                                                           ACGAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCA                                >  2:2486704/1‑91
                                                                            CGAAATCAGTAATTGTACTTAACCTTTTTAAAACTCTAATCATATGTTAGTTATTTCATTCTTCGGAATAATATTAAGAAGTCTGGTGCAC                               >  2:3433220/1‑91
                                                                             GAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACC                              >  2:1580654/1‑91
                                                                             GAAATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACC                              >  2:1580639/1‑91
                                                                                ATCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAACTATGGTGCACCGAT                           >  2:975343/1‑91
                                                                                 TCAGTAATTGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATA                          >  2:2848317/1‑91
                                                                                          GTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATG                 >  2:3431792/1‑91
                                                                                           TACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCTTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGA                >  2:217552/1‑91
                                                                                           TACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGA                >  1:176434/1‑91
                                                                                           TACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGA                >  2:217492/1‑91
                                                                                            ACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGAT               >  1:699372/1‑91
                                                                                            ACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGAT               <  1:3453789/91‑1
                                                                                            ACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGAT               >  2:3603794/1‑91
                                                                                             CTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATA              <  1:3005151/91‑1
                                                                                             CTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATA              <  1:3005166/91‑1
                                                                                             CTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATA              <  2:436229/91‑1
                                                                                              TTATCCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAA             <  2:987325/91‑1
                                                                                              TTAACCTTTTTTAAACTCTAATCATATGTTATTTATTTCATTCTTCGTAATAATATTAAGAAGTATGCTGCACCGATAAGTGCAATGATAA             >  2:3018191/1‑91
                                                                                              TTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTTAGAAGTATGGTGCACCGATAATTGCAATGATAA             >  1:3238118/1‑91
                                                                                              TTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAA             >  2:959710/1‑91
                                                                                              TTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAA             <  2:1505995/91‑1
                                                                                              TTAACCTTTGTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAA             <  1:3545415/91‑1
                                                                                              TTAACCTTTCTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAA             <  1:3546167/91‑1
                                                                                               TAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAAC            <  1:3920995/91‑1
                                                                                                 ACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATATCCC          >  1:3556667/1‑91
                                                                                                 ACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCC          <  1:3351150/91‑1
                                                                                                 ACCTTTTTTAAACTCTAACCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTCTGGTGCACCGATAATTGCAATGATAACCC          >  2:2978842/1‑91
                                                                                                  CCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCC         <  1:1715348/91‑1
                                                                                                  CCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCC         <  2:2760437/91‑1
                                                                                                   CTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGCTAATTGCAATGATAACCCCA        >  2:461221/1‑91
                                                                                                   CTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCA        <  1:3900844/91‑1
                                                                                                   CTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCA        >  2:2871053/1‑91
                                                                                                    TTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAA       >  2:1567405/1‑91
                                                                                                     TTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAAC      <  2:2551621/91‑1
                                                                                                     TTTATAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAAGGATAACCCCAAC      <  1:3057976/91‑1
                                                                                                      TTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACA     >  2:1604818/1‑91
                                                                                                       TTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAG    <  2:2202125/91‑1
                                                                                                       TTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAG    >  1:1396342/1‑91
                                                                                                       TTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAG    >  1:766041/1‑91
                                                                                                       TTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAG    >  1:765899/1‑91
                                                                                                         TAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAGGA  >  1:568579/1‑91
                                                                                                         TAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAGGA  <  1:755793/91‑1
                                                                                                                                                                                                    
GTGCACCATACTTCTTAATATTATTACGAAGAATGAAATAACTAACATATGATTAGAGTTTAAAAAAGGTTAAGTACGAAATCAGTAATTGTACTTAACCTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2307912‑2307807
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAGGA  >  USA300TCH1516_ALE/2307852‑2307941

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.