New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2307807 =151 (0.740)20 (0.120) 11/128 NT 13.7% intergenic (‑171/+65) USA300HOU_RS11770/fecD_2 hypothetical protein/Fe(3+) dicitrate transport system permease protein FecD
?USA300TCH1516_ALE 2307852 = 131 (0.810)intergenic (‑216/+20) USA300HOU_RS11770/fecD_2 hypothetical protein/Fe(3+) dicitrate transport system permease protein FecD

Only 100 of 272 total aligned reads displayed.

GTTATTAAATATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAGGAA  >  USA300TCH1516_ALE/2307762‑2307942
                                                                                          |                                                                                          
gTTATTAAATATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTa                                                                                            <  2:2272130/91‑1 (MQ=255)
gTTATTAAATATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTa                                                                                            <  1:340715/91‑1 (MQ=255)
 ttattaAATATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACACTTACTGATTTCGTACTTAACCTTTTTTaa                                                                                           >  1:3172375/1‑91 (MQ=255)
 ttattaAATATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTaa                                                                                           <  2:594327/91‑1 (MQ=255)
  tattaAATATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTaaa                                                                                          >  1:3120410/1‑91 (MQ=255)
   attaAATATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAAc                                                                                         <  2:3220235/91‑1 (MQ=255)
    ttaAATATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAAct                                                                                        <  2:1900088/91‑1 (MQ=255)
      aaaTATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAActct                                                                                      >  1:1559914/1‑91 (MQ=255)
       aaTATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTa                                                                                     >  2:1538092/1‑91 (MQ=255)
         tataCGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAAt                                                                                   <  2:2573052/91‑1 (MQ=255)
         tataCGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAAt                                                                                   <  1:29300/91‑1 (MQ=255)
          ataCGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATc                                                                                  >  1:1040757/1‑91 (MQ=255)
          ataCGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAACTACAATTACTGATTTCGTACTTAACCTTTATTAAACTCTAATc                                                                                  >  1:3955004/1‑91 (MQ=255)
            aCGCTATTTCTGGTAATTTTTCATGATGAATTCAAAAAAGGTTAAGTACAATTACTGATGTCGTACTTAACCTTTTTTAAACTCTAATCat                                                                                <  2:3016601/91‑1 (MQ=255)
               cTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATg                                                                             <  2:2714217/91‑1 (MQ=255)
               cTATTTCTTGTAATTTTCCAAGATGAACTCAAAAAAGGTTAAGTACAATTACTGATTACCTACTTAACCATATATAAACTCTAATCatatt                                                                             >  2:2378563/1‑90 (MQ=255)
                tATTCCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATgt                                                                            >  1:3125653/1‑91 (MQ=255)
                 aTTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATgtt                                                                           <  1:1600888/91‑1 (MQ=255)
                 aTTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATgtt                                                                           >  1:3451091/1‑91 (MQ=255)
                   ttCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATgttag                                                                         >  1:3865275/1‑91 (MQ=255)
                    tCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATgttagt                                                                        <  1:282137/91‑1 (MQ=255)
                    tCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATgttagt                                                                        <  1:2488328/91‑1 (MQ=255)
                      ttGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATgttagtta                                                                      >  2:3619596/1‑91 (MQ=255)
                        gTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTATCCTTTTTTAAACTCTAATCATATGTTAGTTAtt                                                                    <  1:2035995/91‑1 (MQ=255)
                        gTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTAtt                                                                    <  2:2649879/91‑1 (MQ=255)
                         tAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTAttt                                                                   <  2:1851204/91‑1 (MQ=255)
                           aTTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCa                                                                 <  2:1081943/91‑1 (MQ=255)
                               ttCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCAtttt                                                             >  2:3727384/1‑89 (MQ=255)
                               ttCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCAttct                                                             <  1:2631791/91‑1 (MQ=255)
                                tCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCAttctt                                                            <  2:225062/91‑1 (MQ=255)
                                 cAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCAttcttc                                                           >  1:2631517/1‑91 (MQ=255)
                                 cAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCAttcttc                                                           <  1:3284890/91‑1 (MQ=255)
                                  aaGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCg                                                          >  1:2308531/1‑91 (MQ=255)
                                   aGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGt                                                         <  1:1188114/91‑1 (MQ=255)
                                    gATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGta                                                        <  1:2775535/91‑1 (MQ=255)
                                    gATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGta                                                        >  1:1435279/1‑91 (MQ=255)
                                     aTGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGtaa                                                       >  1:3644353/1‑91 (MQ=255)
                                     aTGAATTCAAAAAAGGCTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTTAACTCTAATCATACTTAAGTTATTCCTTTCTTCTtaa                                                       >  2:3037837/1‑91 (MQ=255)
                                        aaTTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGtaataa                                                    <  1:305277/91‑1 (MQ=255)
                                         aTTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTaataat                                                   >  2:3528570/1‑91 (MQ=255)
                                          ttCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAataata                                                  >  2:1672020/1‑91 (MQ=255)
                                           tCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAatat                                                 >  1:2072071/1‑91 (MQ=255)
                                            cAAATAAGGTTAAGTACAATTACTGATTTCGTACTTATCCTTTTTTAAACGCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATAtt                                                <  2:535701/91‑1 (MQ=255)
                                             AAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTa                                               >  2:3345811‑M1/1‑91 (MQ=255)
                                              AAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTaa                                              <  1:56466‑M1/91‑1 (MQ=255)
                                               AAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTaag                                             >  2:1611930‑M1/1‑91 (MQ=255)
                                                AAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTaaga                                            <  1:3521623‑M1/91‑1 (MQ=255)
                                                 AAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTaagaa                                           >  1:2613146‑M1/1‑91 (MQ=255)
                                                 AAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTaagaa                                           <  2:3124458‑M1/91‑1 (MQ=255)
                                                  AGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTaagaag                                          >  2:2443528‑M1/1‑91 (MQ=255)
                                                   ggttaagtacgaaatcagtaattgtacttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGt                                         >  1:2209274‑M2/40‑91 (MQ=255)
                                                   GGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGt                                         >  2:834135‑M1/1‑91 (MQ=255)
                                                    gttaagtacgaaatcagtaattgtacttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTa                                        >  1:105668‑M2/39‑91 (MQ=255)
                                                    GTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTa                                        >  1:306686‑M1/1‑91 (MQ=255)
                                                    GTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTa                                        >  2:338523‑M1/1‑91 (MQ=255)
                                                      TAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATg                                      <  1:1430096‑M1/91‑1 (MQ=255)
                                                      TAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATg                                      >  1:895587‑M1/1‑91 (MQ=255)
                                                      TAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATg                                      <  1:3783279‑M1/91‑1 (MQ=255)
                                                       AAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATgg                                     >  2:1300212‑M1/1‑91 (MQ=255)
                                                         GTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTg                                   >  2:1393523‑M1/1‑91 (MQ=255)
                                                          TACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGc                                  >  2:2954480‑M1/1‑91 (MQ=255)
                                                           acgaaatcagtaattgtacttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCa                                 >  1:262806‑M2/32‑91 (MQ=255)
                                                           acgaaatcagtaattgtacttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCa                                 >  2:2486704‑M2/32‑91 (MQ=255)
                                                           ACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCa                                 >  2:485251‑M1/1‑91 (MQ=255)
                                                           ACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCa                                 >  2:2173244‑M1/1‑91 (MQ=255)
                                                           ACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCa                                 >  1:594151‑M1/1‑91 (MQ=255)
                                                            CAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCAc                                >  2:1167081‑M1/1‑91 (MQ=255)
                                                             aaTTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCAcc                               <  1:2521402/91‑1 (MQ=255)
                                                             aaTTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCAcc                               <  2:3147283/91‑1 (MQ=255)
                                                             aaTTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCAcc                               <  1:965037/91‑1 (MQ=255)
                                                              aTTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATGTGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCg                              <  2:3473834/91‑1 (MQ=255)
                                                              aTTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCg                              >  2:1032040/1‑91 (MQ=255)
                                                               ttACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGa                             <  1:2557317/91‑1 (MQ=255)
                                                                tACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGAt                            <  1:1662881/91‑1 (MQ=255)
                                                                 aCTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATa                           >  1:803790/1‑91 (MQ=255)
                                                                 aCTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATa                           <  2:3857157/91‑1 (MQ=255)
                                                                 aCTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATa                           >  2:1436550/1‑91 (MQ=255)
                                                                  cTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATaa                          <  2:586146/91‑1 (MQ=255)
                                                                   tGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAAt                         <  2:2576234/91‑1 (MQ=255)
                                                                      tttCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGc                      <  2:2888776/91‑1 (MQ=255)
                                                                      tttCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGc                      >  2:1820318/1‑91 (MQ=255)
                                                                      tttCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGc                      <  2:1990707/91‑1 (MQ=255)
                                                                       ttCGTACTTAACC‑TTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCaa                    <  2:3936612/91‑1 (MQ=255)
                                                                        tCGTACTTAACCTTTTTAAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCaa                    <  1:2677894/91‑1 (MQ=255)
                                                                         cGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAAt                   <  1:1628412/91‑1 (MQ=255)
                                                                          gtacttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATg                  >  2:3431792‑M2/17‑91 (MQ=255)
                                                                           tacttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCTTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGa                 >  2:217552‑M2/16‑91 (MQ=255)
                                                                           tacttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGa                 >  1:176434‑M2/16‑91 (MQ=255)
                                                                            acttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGAt                >  2:3603794‑M2/15‑91 (MQ=255)
                                                                             cttaaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATa               <  1:3005151‑M2/78‑1 (MQ=255)
                                                                              ttatccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATaa              <  2:987325‑M2/79‑1 (MQ=255)
                                                                              ttaacctttcttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATaa              <  1:3546167‑M2/79‑1 (MQ=255)
                                                                               taaccttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAAc             <  1:3920900‑M2/80‑1 (MQ=255)
                                                                                 accttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAAccc           <  1:3351150‑M2/82‑1 (MQ=255)
                                                                                 accttttttAAACTCTAACCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTCTGGTGCACCGATAATTGCAATGATAAccc           >  2:2978842‑M2/10‑91 (MQ=255)
                                                                                   cttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCa         >  2:2871053‑M2/8‑91 (MQ=255)
                                                                                    ttttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCaa        >  2:1567405‑M2/7‑91 (MQ=255)
                                                                                      ttttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACa      >  2:1604818‑M2/5‑91 (MQ=255)
                                                                                       tttAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAg     >  1:765899‑M2/4‑91 (MQ=255)
                                                                                          aaaCTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAGGaa  <  1:86348/91‑1 (MQ=255)
                                                                                          |                                                                                          
GTTATTAAATATACGCTATTTCTTGTAATTTTTCAAGATGAATTCAAAAAAGGTTAAGTACAATTACTGATTTCGTACTTAACCTTTTTTAAACTCTAATCATATGTTAGTTATTTCATTCTTCGTAATAATATTAAGAAGTATGGTGCACCGATAATTGCAATGATAACCCCAACAGGAA  >  USA300TCH1516_ALE/2307762‑2307942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.