| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2322827 | 144 (0.710) | 11 (0.060) | 6/142 | NT | 7.8% | intergenic (‑267/+40) | opuD_2/USA300HOU_RS11850 | Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein |
| ? | USA300TCH1516_ALE | = 2322846 | 132 (0.730) | intergenic (‑286/+21) | opuD_2/USA300HOU_RS11850 | Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein | |||||
AGTAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2322730‑2322827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtcgcctTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAAA < USA300TCH1516_ALE/2322846‑2322757 AGTAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAA > 1:1946471/1‑91AGTAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAA < 2:2084544/91‑1AGTAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAA > 2:1960546/1‑91AGTAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAA < 1:875132/91‑1 GTAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAG < 2:2003139/91‑1 GTAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAG < 1:2581829/91‑1 GTAATGCCTTGCGAGGGCATTAGTGATTTGATACCTGCAAAGTGGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAG < 1:177369/91‑1 TAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGT > 2:1993930/1‑91 TAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGT > 1:3299958/1‑91 AATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGATACAAAAAATAAGTC < 2:3357522/91‑1 AATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAGTAAGTC < 1:3074169/91‑1 AATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTC > 2:659384/1‑91 AATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTC > 2:2156052/1‑91 AATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTC > 1:840188/1‑91 AATGCCTTTCTAGTGCATTATTGATTTGATACCNGCAAAGTTGCCNTATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTC < 1:1601655/91‑1 ATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCG < 2:2117001/91‑1 TGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGC > 1:1132194/1‑91 TGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGC < 2:2369590/91‑1 TGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGC > 1:2453626/1‑91 TGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGC > 2:463737/1‑91 GCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCC > 1:2551764/1‑91 GCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCC > 2:3344681/1‑91 GCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCC > 1:2551823/1‑91 GCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCC > 1:2552531/1‑91 TGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGT < 2:2796993/91‑1 GATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTA < 2:1034860/91‑1 GATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTA < 2:1034786/91‑1 ATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTAT < 1:3479587/91‑1 TACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTATAGGCGA < 1:631180/91‑1 ACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTATAGGCGAC < 1:2658027/91‑1 ACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTATAGGCGAC < 2:2096621/91‑1 CTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACTT < 2:3831787/91‑1 CTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACTT < 2:3831933/91‑1 CTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACTT < 2:3831891/91‑1 CTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTTATGCAGAAAATACTGTATAGGCGACTT < 2:271766/91‑1 AAGTCGCCTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAG < 2:3237275/91‑1 AGTCGCCTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGG < 1:2006661/91‑1 TCGCCTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTA < 2:1526170/91‑1 GCCTTATGCAGATAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATC > 1:3029850/1‑91 GCCTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATC < 2:2302074/91‑1 GCCTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATC > 2:2087043/1‑91 GCCTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATC < 2:3251915/91‑1 CCTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCA < 2:2694182/91‑1 CTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAA > 1:2943621/1‑91 CTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAA > 1:714622/1‑91 CTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAA < 1:521952/91‑1 CTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAA > 1:2857773/1‑91 CTTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAA > 1:2943440/1‑91 TTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAAA > 1:1774136/1‑91 TTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAAA < 1:319130/91‑1 TTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAAA > 1:3129164/1‑91 AGTAATGCCTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2322730‑2322827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagtcgcctTATGCAGAAAATACTGTATAGGCGACTTATTTTTTGTGTCTAGCGACTATTGATTCTAAACGGAAATATGGCAACTTTGCAGGTATCAAA < USA300TCH1516_ALE/2322846‑2322757 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |