New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2322827144 (0.710)11 (0.060) 6/142 NT 7.8% intergenic (‑267/+40) opuD_2/USA300HOU_RS11850 Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein
?USA300TCH1516_ALE = 2322846 132 (0.730)intergenic (‑286/+21) opuD_2/USA300HOU_RS11850 Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein

Only 100 of 248 total aligned reads displayed.

CTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTG  >  USA300TCH1516_ALE/2322738‑2322917
                                                                                         |                                                                                          
cTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCta                                                                                           <  2:2347876/91‑1 (MQ=255)
   tCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATAc                                                                                        <  1:1079481/91‑1 (MQ=255)
   tCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATAc                                                                                        >  1:3959634/1‑91 (MQ=255)
   tCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATAc                                                                                        >  1:1676417/1‑91 (MQ=255)
   tCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATAc                                                                                        >  1:2244118/1‑91 (MQ=255)
    cTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACa                                                                                       <  1:3835761/91‑1 (MQ=255)
    cTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACa                                                                                       <  1:3471328/91‑1 (MQ=255)
    cTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACa                                                                                       >  2:283513/1‑91 (MQ=255)
    cTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACAAAAAAAATAAGTCGCCTATACa                                                                                       <  2:1882218/91‑1 (MQ=255)
     tAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAg                                                                                      <  2:2584484/91‑1 (MQ=255)
     gaGTGCGTGAGTGATTGGATACGTGCAGGGGGGCGAGATGTCCGGTTGGGATCAATAGTCGCTAGACACAAAAGATAAGTCGGCTATACAg                                                                                      <  2:239188/90‑1 (MQ=255)
      aGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGt                                                                                     <  1:1864767/91‑1 (MQ=255)
       gTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTa                                                                                    <  2:1365522/91‑1 (MQ=255)
          cATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTAttt                                                                                 >  1:1268157/1‑91 (MQ=255)
          cATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTAttt                                                                                 >  1:1728132/1‑91 (MQ=255)
           attattGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTAtttt                                                                                <  1:616036/91‑1 (MQ=255)
             tattGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCt                                                                              >  1:376055/1‑91 (MQ=255)
              attGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTg                                                                             <  2:2444388/91‑1 (MQ=255)
               acatcaattgttggaaaaacaatcaatgattggaaaattagtaattaatatatagattagtaagtaAAGTCGCCTATACAGTATTTTCTGc                                                                            >  2:2973129‑M1/67‑91 (MQ=255)
               acatcaattgttggaaaaacaatcaatgattggaaaattagtaattaatatatagattagtaagtaAAGTCGCCTATACAGTATTTTCTGc                                                                            >  2:2509083‑M1/67‑91 (MQ=255)
                tgatttgatACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCa                                                                           <  1:1511385/91‑1 (MQ=255)
                tgatttgatACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCa                                                                           >  2:2639365/1‑91 (MQ=255)
                tgatttgatACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCa                                                                           <  2:2146060/91‑1 (MQ=255)
                tgatttgatACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCa                                                                           >  1:3873404/1‑91 (MQ=255)
                 gatttgatACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTtatgcagaaaatactgta                                                                          <  2:1034786‑M1/91‑19 (MQ=255)
                  tcaattgttggaaaaacaatcaatgattggaaaattagtaattaatatatagattagtaagtaAAGTCGCCTATACAGTATTTTCTGCATa                                                                         >  2:920674‑M1/64‑91 (MQ=255)
                  atttgatACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTAGAAAGAAAAAAAAAATAAGTCGCCTATACAGTATTTTCTGCATa                                                                         <  2:3899624/91‑1 (MQ=255)
                   tttGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAa                                                                        <  1:319130‑M2/91‑2 (MQ=255)
                   caattgttggaaaaacaatcaatgattggaaaattagtaattaatatatagattagtaagtaAAGTCGCCTATACAGTATTTTCTGCATaa                                                                        >  1:1312972‑M1/63‑91 (MQ=255)
                    ttGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAag                                                                       >  1:2857773‑M2/1‑89 (MQ=255)
                    ttGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAag                                                                       <  1:521952‑M2/91‑3 (MQ=255)
                     tGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAagg                                                                      <  2:2694182‑M2/91‑4 (MQ=255)
                      gATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAaggc                                                                     <  2:2302074‑M2/91‑5 (MQ=255)
                      gATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAaggc                                                                     <  2:3251915‑M2/91‑5 (MQ=255)
                      gATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTATCTGCATAaggc                                                                     >  1:3029850‑M2/1‑87 (MQ=255)
                        tACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAaggcga                                                                   <  2:1526170‑M2/91‑7 (MQ=255)
                         ttggaaaaacaatcaatgattggaaaattagtaattaatatatagattagtaagtaAAGTCGCCTATACAGTATTTTCTGCATAAGGCGAc                                                                  >  1:2504150‑M1/57‑91 (MQ=255)
                         aCCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTtatgcagaaaatactgtataggcgac                                                                  <  2:2096621‑M1/91‑27 (MQ=255)
                         aCCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTtatgcagaaaatactgtataggcgac                                                                  <  1:2658027‑M1/91‑27 (MQ=255)
                           cTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTtatgcagaaaatactgtataggcgactt                                                                <  2:3831891‑M1/91‑29 (MQ=255)
                           cTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTtatgcagaaaatactgtataggcgactt                                                                <  2:3831787‑M1/91‑29 (MQ=255)
                           cTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAaggcgactt                                                                <  2:3237275‑M2/91‑10 (MQ=255)
                             gCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTtta                                                              <  1:579602/91‑1 (MQ=255)
                             gCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTtta                                                              <  2:223454/91‑1 (MQ=255)
                             gCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTtta                                                              <  2:1370946/91‑1 (MQ=255)
                              cAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTttac                                                             <  1:1909891/91‑1 (MQ=255)
                              cAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTttac                                                             <  2:1118537/91‑1 (MQ=255)
                              cAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTttac                                                             <  1:2081368/91‑1 (MQ=255)
                                    tGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTa                                                       >  1:1188826/1‑91 (MQ=255)
                                     gCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTaa                                                      >  2:3382170/1‑91 (MQ=255)
                                        atatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCt                                                   >  2:3695715/1‑91 (MQ=255)
                                        atatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCt                                                   >  1:2765335/1‑91 (MQ=255)
                                         tatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCta                                                  <  2:3325938/91‑1 (MQ=255)
                                         tatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCta                                                  <  1:298508/91‑1 (MQ=255)
                                         tatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCta                                                  <  1:792369/91‑1 (MQ=255)
                                            ttCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCtatat                                               >  1:2658166/1‑91 (MQ=255)
                                               cGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATatt                                            <  1:1448396/91‑1 (MQ=255)
                                                gTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATatta                                           >  2:1285597/1‑91 (MQ=255)
                                                  ttAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaat                                         <  2:3559974/91‑1 (MQ=255)
                                                   tAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatt                                        <  2:3947828/91‑1 (MQ=255)
                                                   tAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatt                                        <  2:1776148/91‑1 (MQ=255)
                                                    aGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattcatta                                       <  1:3125418/91‑1 (MQ=255)
                                                    aGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatta                                       <  1:358735/91‑1 (MQ=255)
                                                      aaTCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACt                                     <  2:2280592/91‑1 (MQ=255)
                                                       aTCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTTCTTACTAATCTATATATTAATTACTa                                    >  2:734333/1‑91 (MQ=255)
                                                       aTCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTa                                    <  1:3611190/91‑1 (MQ=255)
                                                        tCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTaa                                   >  1:3725057/1‑91 (MQ=255)
                                                          aaTAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtt                                 <  2:1676428/91‑1 (MQ=255)
                                                           aTAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAttt                                <  1:694222/91‑1 (MQ=255)
                                                            tAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtttt                               <  1:2761528/91‑1 (MQ=255)
                                                            tAGTCGCTAGACAAAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtttt                               <  2:1731641/91‑1 (MQ=255)
                                                              gTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTcc                             >  2:149485/1‑91 (MQ=255)
                                                              gTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTcc                             <  2:2264784/91‑1 (MQ=255)
                                                               tCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCa                            <  2:1456823/91‑1 (MQ=255)
                                                                cGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCaa                           <  2:3741920/91‑1 (MQ=255)
                                                                 gCTAGACACAACAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGCCTTAACTTACTAGTCTTAATATGAATTACAAATATTCCAAt                          >  2:1573226/1‑91 (MQ=255)
                                                                 gCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAAt                          <  2:573650/91‑1 (MQ=255)
                                                                   tAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCa                        >  1:471724/1‑91 (MQ=255)
                                                                    aGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCat                       >  1:734501/1‑91 (MQ=255)
                                                                    aGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCat                       <  2:86134/91‑1 (MQ=255)
                                                                       cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                    <  2:1201322/91‑1 (MQ=255)
                                                                       cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                    >  1:2464835/1‑91 (MQ=255)
                                                                        acaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgat                   <  2:200348/91‑1 (MQ=255)
                                                                          aaaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgattg                 <  2:1955936/91‑1 (MQ=255)
                                                                          aaaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgattg                 >  2:2398213/1‑91 (MQ=255)
                                                                           aaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTGCTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGt                <  1:3134766/91‑1 (MQ=255)
                                                                           aaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGt                <  1:3345303/91‑1 (MQ=255)
                                                                               aTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGttttt            <  1:2826155/91‑1 (MQ=255)
                                                                                 aaGTCGCCTATACAGTATTTTCTGCATAaggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcag          <  2:271766‑M2/91‑64 (MQ=255)
                                                                                 aaGTCGCCTATACAGTATTTTCTGCATAaggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcag          <  2:3831933‑M2/91‑64 (MQ=255)
                                                                                  aGTCGCCTtatgcagaaaatactgtataggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcagg         <  1:2006661‑M1/91‑84 (MQ=255)
                                                                                  AGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCca         >  1:3816259‑M1/1‑91 (MQ=255)
                                                                                    tCGCCTATACAGTATTTTCTGCATAaggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcaggta       <  1:631180‑M2/91‑67 (MQ=255)
                                                                                    TCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaac       <  1:1820759‑M1/91‑1 (MQ=255)
                                                                                      GCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaacaa     >  2:1299739‑M1/1‑91 (MQ=255)
                                                                                        cTtatgcagaaaatactgtataggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcaggtatcaa   >  1:2943621‑M1/1‑2 (MQ=255)
                                                                                        cTtatgcagaaaatactgtataggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcaggtatcaa   >  1:2943440‑M1/1‑2 (MQ=255)
                                                                                        CTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAAtt   >  2:3541288‑M1/1‑91 (MQ=255)
                                                                                        CTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAAtt   >  2:905957‑M1/1‑91 (MQ=255)
                                                                                         ttatgcagaaaatactgtataggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcaggtatcaaa  >  1:1774136‑M1/1‑1 (MQ=255)
                                                                                         |                                                                                          
CTTTCTAGTGCATTATTGATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTG  >  USA300TCH1516_ALE/2322738‑2322917

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.