New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2322827144 (0.710)11 (0.060) 6/142 NT 7.8% intergenic (‑267/+40) opuD_2/USA300HOU_RS11850 Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein
?USA300TCH1516_ALE = 2322846 132 (0.730)intergenic (‑286/+21) opuD_2/USA300HOU_RS11850 Glycine betaine transporter OpuD/Zinc‑type alcohol dehydrogenase‑like protein

Only 100 of 214 total aligned reads displayed.

ATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTT  >  USA300TCH1516_ALE/2322756‑2322935
                                                                                          |                                                                                         
atttgatACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTAGAAAGAAAAAAAAAATAAGTCGCCTATACAGTATTTTCTGCATa                                                                                           <  2:3899624/91‑1 (MQ=255)
 tttGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAa                                                                                          >  1:1774136‑M2/1‑90 (MQ=255)
 caattgttggaaaaacaatcaatgattggaaaattagtaattaatatatagattagtaagtaAAGTCGCCTATACAGTATTTTCTGCATaa                                                                                          >  1:1310485‑M1/63‑91 (MQ=255)
  ttGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAag                                                                                         >  1:2943440‑M2/1‑89 (MQ=255)
  ttGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAag                                                                                         <  1:521952‑M2/91‑3 (MQ=255)
   tGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAagg                                                                                        <  2:2694182‑M2/91‑4 (MQ=255)
    gATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAaggc                                                                                       <  2:2302074‑M2/91‑5 (MQ=255)
    gATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAaggc                                                                                       <  2:3251915‑M2/91‑5 (MQ=255)
    gATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTATCTGCATAaggc                                                                                       >  1:3029850‑M2/1‑87 (MQ=255)
        ccTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAaggcgact                                                                                   <  1:2006661‑M2/91‑9 (MQ=255)
           gCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTtta                                                                                <  2:223454/91‑1 (MQ=255)
           gCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTtta                                                                                <  1:579602/91‑1 (MQ=255)
           gCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTtta                                                                                <  1:404066/91‑1 (MQ=255)
            cAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTttac                                                                               <  1:1909891/91‑1 (MQ=255)
                gTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTttacttac                                                                           >  2:238523/1‑91 (MQ=255)
                  tGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTa                                                                         >  2:90212/1‑91 (MQ=255)
                      atatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCt                                                                     >  1:2763650/1‑91 (MQ=255)
                       tatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCta                                                                    <  2:1804709/91‑1 (MQ=255)
                       tatTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCta                                                                    <  2:3325938/91‑1 (MQ=255)
                         ttaccGCTTAGAATCAATAGTTGCTAGACACAAAAAATAAGGCGCCTATACAGTATTTTCTGCATAAGGCGAGGTTACTTACTAATCtata                                                                  >  2:1613844/4‑91 (MQ=255)
                          ttCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCtatat                                                                 >  1:2658166/1‑91 (MQ=255)
                             cGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATatt                                                              <  1:3796312/91‑1 (MQ=255)
                             cGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATatt                                                              <  1:1448396/91‑1 (MQ=255)
                              gTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATatta                                                             >  2:1285620/1‑91 (MQ=255)
                              gTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATatta                                                             >  2:2158063/1‑91 (MQ=255)
                               tttAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaa                                                            >  2:3733321/1‑91 (MQ=255)
                                  agtaTCAATAGTCGCTAGCCACAAAAAATAAGGCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatta                                                         <  2:1124586/88‑1 (MQ=255)
                                  aGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattcatta                                                         <  1:3125418/91‑1 (MQ=255)
                                  aGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATattaatta                                                         <  1:358735/91‑1 (MQ=255)
                                   gAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTAc                                                        >  2:2479412/1‑91 (MQ=255)
                                        aaTAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtt                                                   >  1:2611680/1‑91 (MQ=255)
                                        aaTAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtt                                                   >  1:1166143/1‑91 (MQ=255)
                                        aaTAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtt                                                   <  2:1676428/91‑1 (MQ=255)
                                         aTAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAttt                                                  <  1:694222/91‑1 (MQ=255)
                                          tAGTCGCTAGACAAAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAAtttt                                                 <  2:1731641/91‑1 (MQ=255)
                                            gTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTcc                                               >  2:149485/1‑91 (MQ=255)
                                            gTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTcc                                               <  2:2264784/91‑1 (MQ=255)
                                            gTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTcc                                               >  1:2766899/1‑91 (MQ=255)
                                              cGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCaa                                             >  1:2874876/1‑91 (MQ=255)
                                               gCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAAt                                            >  2:1571830/1‑91 (MQ=255)
                                               gCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAAt                                            <  2:573650/91‑1 (MQ=255)
                                                cTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATc                                           >  2:6629/1‑91 (MQ=255)
                                                  aGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCat                                         >  1:734501/1‑91 (MQ=255)
                                                  aGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCat                                         <  2:86134/91‑1 (MQ=255)
                                                   gACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCatt                                        <  2:2879826/91‑1 (MQ=255)
                                                   gACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCatt                                        <  1:2750686/91‑1 (MQ=255)
                                                     cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                      <  2:391971/91‑1 (MQ=255)
                                                     cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                      <  2:1403044/91‑1 (MQ=255)
                                                     cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                      <  2:1201322/91‑1 (MQ=255)
                                                     cacaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattga                                      >  1:2464960/1‑91 (MQ=255)
                                                      acaAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgat                                     <  2:200348/91‑1 (MQ=255)
                                                        aaaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgattg                                   >  2:2398213/1‑91 (MQ=255)
                                                        aaaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgattg                                   <  1:2967007/91‑1 (MQ=255)
                                                        aaaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCattgattg                                   <  2:1955936/91‑1 (MQ=255)
                                                         aaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTGCTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGt                                  <  1:3134766/91‑1 (MQ=255)
                                                         aaaaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGt                                  <  1:3345303/91‑1 (MQ=255)
                                                           aaaTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGttt                                <  1:1450506/91‑1 (MQ=255)
                                                             aTAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGttttt                              <  1:2826155/91‑1 (MQ=255)
                                                              tAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTc                             >  2:1752645/1‑91 (MQ=255)
                                                               aaGTCGCCTATACAGTATTTTCTGCATAaggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcag                            <  2:3831933‑M2/91‑64 (MQ=255)
                                                               aaGTCGCCTATACAGTATTTTCTGCATAaggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcag                            <  2:3831787‑M2/91‑64 (MQ=255)
                                                               AAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTcc                            <  2:1362050‑M1/91‑1 (MQ=255)
                                                                AGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCca                           >  2:90948‑M1/1‑91 (MQ=255)
                                                                AGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCca                           >  1:3816259‑M1/1‑91 (MQ=255)
                                                                 GTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaa                          <  1:360334‑M1/91‑1 (MQ=255)
                                                                 GTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaa                          <  1:372534‑M1/91‑1 (MQ=255)
                                                                 GTCGCCCATACAGTATTTTCAGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATATTCCAATCCTTGACTGTTTctccca                          <  2:758631‑M1/91‑3 (MQ=255)
                                                                 GTCGCATATACAGTATTTTCTGCATCAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaa                          >  1:3672582‑M1/1‑91 (MQ=255)
                                                                  tCGCCTATACAGTATTTTCTGCATAaggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcaggta                         <  1:631180‑M2/91‑67 (MQ=255)
                                                                   CGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaaca                        <  1:1899477‑M1/91‑1 (MQ=255)
                                                                    GCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCcaacaa                       <  2:3479534‑M1/91‑1 (MQ=255)
                                                                     CCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAAt                      <  2:3571153‑M1/91‑1 (MQ=255)
                                                                      CTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAAtt                     >  2:3541288‑M1/1‑91 (MQ=255)
                                                                       TATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTg                    >  2:2727900‑M1/1‑91 (MQ=255)
                                                                        ataCAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGa                   <  2:1337033/91‑1 (MQ=255)
                                                                         taCAGTATTTTCTGCATAaggcgacttattttttgtgtctagcgactattgattctaaacggaaatatggcaactttgcaggtatcaaatc                  <  2:1034860‑M2/91‑74 (MQ=255)
                                                                         taCAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAt                  <  2:1034621/91‑1 (MQ=255)
                                                                           cAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAtgt                >  1:1214977/1‑91 (MQ=255)
                                                                           cAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAtgt                >  1:1945416/1‑91 (MQ=255)
                                                                            aGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGAtgtg               >  2:3272557/1‑91 (MQ=255)
                                                                             gTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGc              <  1:84275/91‑1 (MQ=255)
                                                                             gTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGc              >  1:2036385/1‑91 (MQ=255)
                                                                               aTTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCtt            >  1:3199084/1‑91 (MQ=255)
                                                                                 tttCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGa          <  1:1267340/91‑1 (MQ=255)
                                                                                  ttCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGat         >  1:1776134/1‑91 (MQ=255)
                                                                                  ttCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGat         <  1:3603386/91‑1 (MQ=255)
                                                                                   tCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGata        <  2:2090362/91‑1 (MQ=255)
                                                                                   tCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGata        <  1:3567340/91‑1 (MQ=255)
                                                                                    cTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGatat       <  2:3793522/91‑1 (MQ=255)
                                                                                    cTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGatat       >  1:3916958/1‑91 (MQ=255)
                                                                                    cTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGatat       <  1:2131531/91‑1 (MQ=255)
                                                                                     tGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGAtata      <  1:3454679/91‑1 (MQ=255)
                                                                                     tGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGAtata      >  1:2319475/1‑91 (MQ=255)
                                                                                     tGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGAtata      <  1:2229746/91‑1 (MQ=255)
                                                                                     tGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGAtata      >  1:877677/1‑91 (MQ=255)
                                                                                      gCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATaa     <  2:3105326/91‑1 (MQ=255)
                                                                                       cATAAGGCGTCTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGCTGTGCTTGATATCAg    <  2:1270353/91‑1 (MQ=255)
                                                                                       cATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAg    <  1:752709/91‑1 (MQ=255)
                                                                                        aTAAGGCGACTTTACTTACTAAACTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGt   >  2:2574300/1‑91 (MQ=255)
                                                                                         tAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGtt  >  2:72548/1‑91 (MQ=255)
                                                                                          |                                                                                         
ATTTGATACCTGCAAAGTTGCCATATTTCCGTTTAGAATCAATAGTCGCTAGACACAAAAAATAAGTCGCCTATACAGTATTTTCTGCATAAGGCGACTTTACTTACTAATCTATATATTAATTACTAATTTTCCAATCATTGATTGTTTTTCCAACAATTGATGTGCTTGATATAAGTT  >  USA300TCH1516_ALE/2322756‑2322935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.