| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2357381 = | 157 (0.770) | 13 (0.070) | 8/140 | NT | 8.3% | intergenic (‑331/+207) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 |
| ? | USA300TCH1516_ALE | 2357417 = | 152 (0.850) | intergenic (‑367/+171) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 | |||||
AAAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2357480‑2357381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > USA300TCH1516_ALE/2357417‑2357505 AAAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTT > 2:428979/1‑91 AGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAA > 1:1470594/1‑91 AGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAA < 1:1605687/91‑1 AGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAA < 1:189918/91‑1 AGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAA > 1:2245615/1‑91 GATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAG > 1:1414033/1‑91 GATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAG > 2:457308/1‑91 ATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGT < 2:137432/91‑1 TTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTC < 2:1891592/91‑1 TTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTC < 2:463258/91‑1 TTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC < 1:1291802/91‑1 TTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC < 2:2268555/91‑1 TTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTCTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC > 2:3009381/1‑91 TTAAAGCGTGAACTCAACAAACTTATAATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCC > 2:2236785/1‑91 gAAAGCGTGAACTGAACAAACTTGTGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG < 2:30471/90‑1 TAAAGCGTGGACTCAACAAACTTATGATGGGGTGCGCGCTTTGTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG < 2:30472/91‑1 TAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG < 2:2056640/91‑1 TAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCG < 2:2056512/91‑1 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:3852519/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 1:582303/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 2:832248/1‑91 AAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT > 2:2346273/1‑91 TATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCT > 2:1336704/1‑91 TATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCT > 2:673886/1‑91 ATCGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTT > 2:1948733/1‑91 CGGACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTA > 1:297309/1‑91 ACTTATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAT > 1:2011359/1‑91 TATGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTT > 1:1935802/1‑91 TGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTA > 2:981252/1‑91 TGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTA > 2:3258355/1‑91 TGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTA > 1:524256/1‑91 TGAACAGAAATGTTTTTAAGTCCGATATTTTATTCAAT‑‑AAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATT > 2:656926/1‑91 ACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTT > 1:597259/1‑91 ACAGAAATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTT > 1:2970645/1‑91 AATGTTTTTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTG > 2:2774048/1‑91 TAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTA < 2:1912035/91‑1 TAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTA < 2:1912261/91‑1 TAAGACCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTA < 1:3295533/91‑1 AAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTAC < 2:2189626/91‑1 AGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACT > 1:3496354/1‑91 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 2:2241986/91‑1 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 2:3194508/91‑1 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 1:540143/91‑1 GTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTC < 1:1353152/91‑1 TCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGTTACTCT > 2:3102311/1‑91 TCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCT < 1:2304562/91‑1 TCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCT < 1:197269/91‑1 CGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCCTTATTTAGTTGCTGGGGTACTCTGA > 2:912510/1‑91 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > 2:1868518/1‑91 ATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > 1:2347083/1‑91 AAAGATTTAAAGCGTGAACTCAACAAACTTATGATGGGGTGCGCGCTTTTTTATTGAATAAAATATCGGACTTATGAACAGAAATGTTTTTAAGTCCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2357480‑2357381‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC > USA300TCH1516_ALE/2357417‑2357505 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |