BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2357381 =	157 (0.770)	13 (0.070)	8/140	NT	8.3%	intergenic (‑331/+207)	ecfA1/rplQ	Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17
*	?	USA300TCH1516_ALE	2357417 =	152 (0.850)	13 (0.070)	8/140	NT	8.3%	intergenic (‑367/+171)	ecfA1/rplQ	Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17

Only 100 of 230 total aligned reads displayed.

AAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC  >  USA300TCH1516_ALE/2357327‑2357505

agcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGTCCGata                                                                                          >  2:1336704‑M1/55‑91 (MQ=255)

aaaCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGata                                                                                          >  1:1594452/1‑91 (MQ=255)

 aaCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGatat                                                                                         >  2:2124344/1‑91 (MQ=255)

  aCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtt                                                                                        <  2:370675/91‑1 (MQ=255)

  aCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtt                                                                                        >  1:3092396/1‑91 (MQ=255)

    tAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtttt                                                                                      >  1:2568392/1‑91 (MQ=255)

     aGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTa                                                                                     >  1:3396781/1‑91 (MQ=255)

     aGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTa                                                                                     <  1:3907421/91‑1 (MQ=255)

      gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt                                                                                    <  1:1229763/91‑1 (MQ=255)

      gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt                                                                                    >  2:3876158/1‑91 (MQ=255)

      gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt                                                                                    <  1:2652445/91‑1 (MQ=255)

      gCTTCATCATATATTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt                                                                                    >  1:3034173/1‑91 (MQ=255)

       cTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAtt                                                                                   >  2:2674402/1‑91 (MQ=255)

        ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc                                                                                  >  1:3319326/1‑91 (MQ=255)

         tcatcaTATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCa                                                                                 >  1:3590248/1‑91 (MQ=255)

         tcatcaTATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCa                                                                                 <  1:2813100/91‑1 (MQ=255)

          catcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCaa                                                                                >  1:1720739/1‑91 (MQ=255)

           atcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAAt                                                                               >  2:2474856/1‑91 (MQ=255)

           atcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAAt                                                                               <  1:772765/91‑1 (MQ=255)

            tcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATa                                                                              <  1:2101172/91‑1 (MQ=255)

                atTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaaaaa                                                                          >  1:601999/1‑91 (MQ=255)

                 tttttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaaaaaa                                                                         >  2:3846532/1‑91 (MQ=255)

                 tttttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaaaaaa                                                                         >  2:3798476/1‑91 (MQ=255)

                   tttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgc                                                                       >  1:3796193/1‑91 (MQ=255)

                   tttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgc                                                                       >  1:2071741/1‑91 (MQ=255)

                   tttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgc                                                                       >  2:346158/1‑91 (MQ=255)

                     tAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgc                                                                     <  1:891519/91‑1 (MQ=255)

                     tAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgc                                                                     >  1:1268527/1‑91 (MQ=255)

                        aTTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCa                                                                  >  2:2364089/1‑91 (MQ=255)

                          tCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAcc                                                                >  1:577526/1‑91 (MQ=255)

                               cTCAAAAAAGTAAATATAAAGAAATCGGACTTATAAACATTTCTGTTCATAAGTCCGATCTTTTATTCAATAAAAAAGCGCGCACCCcatc                                                           <  1:3515486/91‑1 (MQ=255)

                                tCAAATAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCTCCCcatca                                                          <  2:2904429/91‑1 (MQ=255)

                                 cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACGCcatcat                                                         >  2:3513463/1‑91 (MQ=255)

                                 cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat                                                         <  1:3179051/91‑1 (MQ=255)

                                 cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat                                                         <  2:3342453/91‑1 (MQ=255)

                                   aaaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATaa                                                       >  2:852950/1‑91 (MQ=255)

                                   aaaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATaa                                                       >  2:1916911/1‑91 (MQ=255)

                                    aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAg                                                      <  1:1081920/91‑1 (MQ=255)

                                    aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAg                                                      <  2:3088959/91‑1 (MQ=255)

                                     aaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGt                                                     >  2:2433315/1‑91 (MQ=255)

                                       aGTAAATATAAAGAAATCGGACTTAAAAAAATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGttt                                                   >  2:3449632/1‑91 (MQ=255)

                                         tAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt                                                 <  2:3233572/91‑1 (MQ=255)

                                         tAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt                                                 <  1:2880635/91‑1 (MQ=255)

                                         tAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt                                                 <  1:1622436/91‑1 (MQ=255)

                                         tAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt                                                 >  2:1213689/1‑91 (MQ=255)

                                           aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGTGCACCCCATCAT‑AGTTTGTTGa                                              >  2:2017564/1‑91 (MQ=255)

                                           aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg                                               >  1:3696338/1‑91 (MQ=255)

                                           aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg                                               >  2:3194388/1‑91 (MQ=255)

                                           aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg                                               >  1:1679536/1‑91 (MQ=255)

                                           aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg                                               >  1:1760795/1‑91 (MQ=255)

                                           aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg                                               >  2:56020/1‑91 (MQ=255)

                                            atatAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGa                                              <  1:1339580/91‑1 (MQ=255)

                                            atatAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGa                                              <  1:1519038/91‑1 (MQ=255)

                                             tataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAg                                             >  1:3252165/1‑91 (MQ=255)

                                             tataAAGAAATCGGACTTAAAAACATTTATGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAg                                             >  2:1811162/1‑91 (MQ=255)

                                              ataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGt                                            <  1:1256888/91‑1 (MQ=255)

                                                 aaGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCa                                         >  1:696552/1‑91 (MQ=255)

                                                   gAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACg                                       <  2:2539934/91‑1 (MQ=255)

                                                     tatcggacttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCt                                     >  2:673886‑M2/38‑91 (MQ=255)

                                                     aaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCt                                     <  1:208391/91‑1 (MQ=255)

                                                      ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt                                    >  1:3852519‑M1/1‑91 (MQ=255)

                                                      ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt                                    >  2:832248‑M1/1‑91 (MQ=255)

                                                        CGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTa                                  <  2:2056640‑M1/91‑1 (MQ=255)

                                                        CGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCACAAGTTTGTTCAGTTCACGctttc                                  <  2:30471‑M1/91‑2 (MQ=255)

                                                         GGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAGAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaa                                 >  2:3009381‑M1/1‑91 (MQ=255)

                                                         GGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATTATAAGTTTGTTGAGTTCACGCTTTaa                                 >  2:2236785‑M1/1‑91 (MQ=255)

                                                         GGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaa                                 <  2:2268555‑M1/91‑1 (MQ=255)

                                                          GACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaaa                                <  2:463258‑M1/91‑1 (MQ=255)

                                                           acttatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAt                               >  1:2011359‑M2/32‑91 (MQ=255)

                                                           ACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAAt                               <  2:137432‑M1/91‑1 (MQ=255)

                                                            CTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATc                              >  1:1414033‑M1/1‑91 (MQ=255)

                                                             TTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCt                             >  1:1470594‑M1/1‑91 (MQ=255)

                                                             TTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCt                             >  1:2245615‑M1/1‑91 (MQ=255)

                                                              tatgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtt                            >  1:1935802‑M2/29‑91 (MQ=255)

                                                               AAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttt                           >  2:428979‑M1/1‑91 (MQ=255)

                                                                tgaacagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttta                          >  1:524256‑M2/27‑91 (MQ=255)

                                                                tgaacagaaatgtttttaagtccgatATTTTATTCAAT‑‑AAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttatt                        >  2:656926‑M2/27‑91 (MQ=255)

                                                                  aaCATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttatt                        <  2:3455361/91‑1 (MQ=255)

                                                                  aaCATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttatt                        <  1:1164914/91‑1 (MQ=255)

                                                                   acagaaatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttattt                       >  1:2970645‑M2/24‑91 (MQ=255)

                                                                   aCATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttattt                       >  1:395160/1‑91 (MQ=255)

                                                                    cATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCtttattta                      >  1:20665/1‑91 (MQ=255)

                                                                     aTTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAg                     <  1:1894621/91‑1 (MQ=255)

                                                                      tttCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGt                    >  2:3365533/1‑91 (MQ=255)

                                                                      tttCTGTTCATAAGACCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGt                    >  2:2581117/1‑91 (MQ=255)

                                                                       ttCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGtt                   <  1:3619463/91‑1 (MQ=255)

                                                                        tCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTg                  >  1:62251/1‑91 (MQ=255)

                                                                        tCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACACCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTg                  >  2:1305851/1‑91 (MQ=255)

                                                                        aatgtttttaagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTg                  >  2:2774048‑M2/19‑91 (MQ=255)

                                                                         cTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGa                 <  1:2609947/91‑1 (MQ=255)

                                                                          tGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGAt                >  2:3359657/1‑91 (MQ=255)

                                                                              cATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATgggg            <  2:758340/91‑1 (MQ=255)

                                                                               aTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGt           >  1:848852/1‑91 (MQ=255)

                                                                               aTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGt           >  1:848235/1‑91 (MQ=255)

                                                                               aTAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGt           >  2:1678226/1‑91 (MQ=255)

                                                                                taagtccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTa          <  2:1912035‑M2/81‑1 (MQ=255)

                                                                                    tccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTActct      <  1:2304562‑M2/85‑1 (MQ=255)

                                                                                    tccgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTActct      <  1:197269‑M2/85‑1 (MQ=255)

                                                                                      cgatATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCCTTATTTAGTTGCTGGGGTACTCTGa    >  2:912510‑M2/5‑91 (MQ=255)

                                                                                        atATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGc  >  1:2347083‑M2/3‑91 (MQ=255)

AAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTTATTTAGTTGATGGGGTACTCTGAGC  >  USA300TCH1516_ALE/2357327‑2357505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.