| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2357381 = | 157 (0.770) | 13 (0.070) | 8/140 | NT | 8.3% | intergenic (‑331/+207) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 |
| ? | USA300TCH1516_ALE | 2357417 = | 152 (0.850) | intergenic (‑367/+171) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 | |||||
Only 100 of 269 total aligned reads displayed.
ATACTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTT > USA300TCH1516_ALE/2357291‑2357471 | aCTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATC > 1:2638694‑M1/1‑91 (MQ=255) aCTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATC > 1:1888521‑M1/1‑91 (MQ=255) aCTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATC > 2:2499325‑M1/1‑91 (MQ=255) tcagagtaccccagcaactaaataaggatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCg > 2:912510‑M1/88‑91 (MQ=255) cTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCG < 1:2238733‑M1/91‑1 (MQ=255) cttCACGGCACTCACTTCTAGAAAAATATATCAAACTAACTTCAGCATATGTTCATTTTCCAACACAAAAAAGTAAATATAAAGAGATCgg < 2:3327223/90‑1 (MQ=255) gagtaccccatcaactaaataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGAc < 1:540143‑M1/7‑1 (MQ=255) gagtaccccatcaactaaataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGAc < 1:1353152‑M1/7‑1 (MQ=255) gagtaccccatcaactaaataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGAc < 2:3194508‑M1/7‑1 (MQ=255) gagtaccccatcaactaaataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGAc < 2:2241986‑M1/7‑1 (MQ=255) cACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACT < 1:1135246‑M1/91‑1 (MQ=255) agtaccccatcaactaaataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACt > 1:3496354‑M1/84‑91 (MQ=255) gtaccccatcaactaaataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACtt < 2:2189626‑M1/9‑1 (MQ=255) taccccatcaactaaataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTa < 2:1912035‑M1/10‑1 (MQ=255) cTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTA < 1:2257035‑M1/91‑1 (MQ=255) ttcattcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTaa > 2:2146185/1‑91 (MQ=255) cattcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTaaaa < 1:3307839/91‑1 (MQ=255) cattcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTaaaa < 1:3931432/91‑1 (MQ=255) caactaaataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACAtt > 2:2774048‑M1/74‑91 (MQ=255) gTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACAttt > 1:898027/1‑91 (MQ=255) gTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACAttt > 1:1224368/1‑91 (MQ=255) gTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACAttt > 1:3256759/1‑91 (MQ=255) ttCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTc < 1:2795791/91‑1 (MQ=255) ttCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTc > 1:733664/1‑91 (MQ=255) ttCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTc < 1:601418/91‑1 (MQ=255) cTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTg < 2:3606650/91‑1 (MQ=255) cTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTg > 1:800915/1‑91 (MQ=255) tAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAtgaacagaaatgt < 2:522090‑M1/91‑14 (MQ=255) tAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGt > 2:2104186/1‑91 (MQ=255) tAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGt > 1:3747732/1‑91 (MQ=255) aGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGtt < 2:3159926/91‑1 (MQ=255) aGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGtt < 1:3067299/91‑1 (MQ=255) aGTGAAATAGATCAATCTAGCTTCAGTATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGtt < 2:3427451/91‑1 (MQ=255) gTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAtgaacagaaatgttt < 1:102255‑M1/91‑16 (MQ=255) taaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCa > 2:981252‑M1/66‑91 (MQ=255) tGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCa > 1:2818391/1‑91 (MQ=255) gAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAtgaacagaaatgttttt < 2:1582434‑M1/91‑18 (MQ=255) aagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATa > 1:1935802‑M1/64‑91 (MQ=255) aaaTTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAAGCGGACTTAAAAGCATTTCTGTTCAta > 2:2352729‑M2/1‑89 (MQ=255) aaTTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaa < 2:338843‑M2/91‑4 (MQ=255) aTTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaag > 2:1406212‑M2/1‑87 (MQ=255) aTTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaag > 2:252153‑M2/1‑87 (MQ=255) aTTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaag > 2:659461‑M2/1‑87 (MQ=255) ttGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagt > 2:1480775‑M2/1‑86 (MQ=255) ttGATCAAACTAGCTTCATCATATTTTTAGATTCGAAAAAAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagt > 2:3105168‑M2/1‑86 (MQ=255) atttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGt > 1:2011359‑M1/61‑91 (MQ=255) aTCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccg > 1:3648184‑M2/1‑83 (MQ=255) aTCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccg > 1:1483756‑M2/1‑83 (MQ=255) tCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccga > 1:1718117‑M2/1‑82 (MQ=255) tCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccga < 2:1714234‑M2/91‑10 (MQ=255) tCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccga < 1:3096227‑M2/91‑10 (MQ=255) cAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccgat < 1:914685‑M2/91‑11 (MQ=255) agcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCATAAGTCCGata > 2:1336704‑M1/55‑91 (MQ=255) aaaCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGata > 1:1594452/1‑91 (MQ=255) aCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtt < 2:370098/91‑1 (MQ=255) aCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtt < 2:3855131/91‑1 (MQ=255) cTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAttt > 1:126473/1‑91 (MQ=255) agattCATCATATTTTTAGAAAAGAAAAAAAAAAAGTAAATATAAAGAAATCGGACTTAAAAATATTTCTGTTCATAAGTCCGATATTTTa < 2:1191205/88‑1 (MQ=25) aGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTa < 1:3907421/91‑1 (MQ=255) gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt < 1:2652445/91‑1 (MQ=255) gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt > 2:3876158/1‑91 (MQ=255) gCTTCATCATATATTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt > 1:3034173/1‑91 (MQ=255) cTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAtt > 2:2698657/1‑91 (MQ=255) ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc < 1:689052/91‑1 (MQ=255) ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc < 1:433437/91‑1 (MQ=255) tttttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATaaaaaa > 2:3798476/1‑91 (MQ=255) tttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgc > 1:2071741/1‑91 (MQ=255) ttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcg > 1:3190866/1‑91 (MQ=255) ttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcg > 1:3533452/1‑91 (MQ=255) aGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgcgcg < 1:2530398/91‑1 (MQ=255) aTTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCa > 2:2364089/1‑91 (MQ=255) ttCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAc < 1:292095/91‑1 (MQ=255) tCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAcc > 1:577526/1‑91 (MQ=255) cGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAccc < 1:3601767/91‑1 (MQ=255) cGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAccc > 1:2320781/1‑91 (MQ=255) aCTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcat > 2:2900163/1‑91 (MQ=255) aCTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcat < 2:568017/91‑1 (MQ=255) cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACGCcatcat > 2:3513463/1‑91 (MQ=255) aaaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATaa > 2:1916911/1‑91 (MQ=255) aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaa > 2:689994‑M2/1‑44 (MQ=255) aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAg < 1:1081928/91‑1 (MQ=255) aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAg < 2:3088959/91‑1 (MQ=255) aaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGt > 2:2433343/1‑91 (MQ=255) aaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGtt < 1:3639719/91‑1 (MQ=255) aGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGttt > 2:3451205/1‑91 (MQ=255) tAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt > 1:197898/1‑91 (MQ=255) tAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt < 2:3233572/91‑1 (MQ=255) aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg > 1:1760795/1‑91 (MQ=255) aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg > 1:1679536/1‑91 (MQ=255) aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg > 2:3002660/1‑91 (MQ=255) aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg > 2:820939/1‑91 (MQ=255) tataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAg > 2:2593099/1‑91 (MQ=255) ataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGt < 2:1137051/91‑1 (MQ=255) ataAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGt < 1:1256606/91‑1 (MQ=255) aaGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCa > 2:851966/1‑91 (MQ=255) aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc > 2:1316738/1‑91 (MQ=255) aaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCt > 1:2112097/1‑91 (MQ=255) aaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCt < 1:208391/91‑1 (MQ=255) aTCGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttg > 1:3715659‑M1/1‑10 (MQ=255) ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt > 1:3852519‑M1/1‑91 (MQ=255) | ATACTTTCACTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTT > USA300TCH1516_ALE/2357291‑2357471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |