| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2371393 = | 188 (0.920) | 9 (0.050) | 6/146 | NT | 5.1% | coding (111/309 nt) | rpsJ | 30S ribosomal protein S10 |
| ? | USA300TCH1516_ALE | 2371427 = | 162 (0.870) | coding (77/309 nt) | rpsJ | 30S ribosomal protein S10 | |||||
AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2371489‑2371393‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtttctACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCCT > USA300TCH1516_ALE/2371427‑2371516 AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGAT < 1:1358515/91‑1AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGAT > 2:777988/1‑91AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGAT < 2:58812/91‑1AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGAT < 2:2377204/91‑1AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGAT < 2:138728/91‑1AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGAT < 1:3648719/91‑1AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGAT < 1:2778913/91‑1AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGAT < 1:2016784/91‑1AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGAT > 1:1779313/1‑91 ATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATG > 1:2979431/1‑91 ATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATG > 2:3140341/1‑91 ATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATG > 2:1769676/1‑91 ATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATG < 1:386016/91‑1 ATCAGAATCAGATTAAAAGCTTATGAGCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATG < 2:3419561/91‑1 TCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATGT > 2:1582567/1‑91 AGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATGTTT > 2:3954520/1‑91 GAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATGTTTC < 1:3548813/91‑1 GAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATGTTTC > 2:1885736/1‑91 AATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATGTTTCT > 1:2734902/1‑91 CCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATGTTTCTGCAATCTTCTCTGCTGATTGATCA > 2:424538/1‑91 AACAGCGAAACGTTCTGGTGCAGATGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTG > 1:3912164/1‑91 AACAGCGAAACGTTCTGGTGCAGATGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTG > 1:3910336/1‑91 AACAGCGAAACGTTCTGGTGCAGATGCTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTG > 2:2239723/1‑91 AGCGAAACGTTCTGGTGCAGATGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATT > 1:3937703/1‑91 GCGAAACGTTCTGGTGCAGATGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTT > 1:310420/1‑91 CGAAACGTTCTGGTGCAGATGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGNGATCATAAGCTTTTAATCTGATTCTGATTTT > 1:635290/1‑91 CTGGTGCAGATGTTTCTACAATATTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGC < 2:3191085/91‑1 CTGGTGCAGATGTTTCTACAATATTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGC < 2:3189559/91‑1 GTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCC > 1:744943/1‑91 TTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCC < 2:1021819/91‑1 TTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCC < 1:1852924/91‑1 TTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCC < 1:2945991/91‑1 TTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCC < 2:2999415/91‑1 TCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTC < 2:2277126/91‑1 TCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTC < 1:1936435/91‑1 CTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCC < 2:2497038/91‑1 CTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCC > 1:1314144/1‑91 CTACAATCTTCTCTGCCGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCC < 2:2497054/91‑1 TACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCCT < 1:72959/91‑1 TACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCCT < 1:418250/91‑1 TACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCCT < 1:1674724/91‑1 AATCAGAATCAGATTAAAAGCTTATGATCACCGCGTAATTGATCAATCAGCAGAGAAGATTGTAGAAACAGCGAAACGTTCTGGTGCAGATGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2371489‑2371393‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtttctACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCCT > USA300TCH1516_ALE/2371427‑2371516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |