BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2371393 =	188 (0.920)	9 (0.050)	6/146	NT	5.1%	coding (111/309 nt)	rpsJ	30S ribosomal protein S10
*	?	USA300TCH1516_ALE	2371427 =	162 (0.870)	9 (0.050)	6/146	NT	5.1%	coding (77/309 nt)	rpsJ	30S ribosomal protein S10

Only 100 of 236 total aligned reads displayed.

TGCACGGCACGGATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCCTT  >  USA300TCH1516_ALE/2371337‑2371517

 gcacggcacgGATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTAc                                                                                           >  2:2451639/1‑91 (MQ=255)

   acggcacggATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACaa                                                                                         >  2:879487/1‑91 (MQ=255)

   acggcacggATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACaa                                                                                         <  2:324475/91‑1 (MQ=255)

   acggcacggATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACaa                                                                                         <  2:2182412/91‑1 (MQ=255)

    cggcacggATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAAt                                                                                        <  1:95770/91‑1 (MQ=255)

    cggcacggATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAAt                                                                                        >  2:1191734/1‑91 (MQ=255)

    cggcacggATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAAt                                                                                        >  1:274247/1‑91 (MQ=255)

      gcacggATGATTGTGAAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATATGCACCAGAACGTTTCGCTGTTTCTACAAtct                                                                                      >  1:3372550/1‑91 (MQ=255)

        acggATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAAtcttc                                                                                    <  1:2393277/91‑1 (MQ=255)

        acggATGATTGTGTAAACTGATTTCACAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAAtcttc                                                                                    >  2:1779448/1‑91 (MQ=255)

         cggATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAAtcttct                                                                                   >  2:2791687/1‑91 (MQ=255)

          ggATGATTGTGTAAACTGATTTCTCAGTTGGTAATGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTtctc                                                                                  >  1:994653/1‑91 (MQ=255)

           gatgatTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTctct                                                                                 >  1:1619123/1‑91 (MQ=255)

           gatgatTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATATGCACCAGAACGTTTCGCTGTTTCTACAATCTTctct                                                                                 >  2:2547302/1‑91 (MQ=255)

             tgatTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTctgc                                                                               <  2:3456707/91‑1 (MQ=255)

             tgatTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTctgc                                                                               >  2:663766/1‑91 (MQ=255)

              gatTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTctgct                                                                              >  2:512394/1‑91 (MQ=255)

              gatTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTctgct                                                                              >  1:3639302/1‑91 (MQ=255)

              gatTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTctgct                                                                              >  1:2829520/1‑91 (MQ=255)

                    gtAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCtgattga                                                                        <  2:45912/91‑1 (MQ=255)

                      aaaGTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTGTGCTGATTGATc                                                                      <  1:3057919/91‑1 (MQ=255)

                      aaaCTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATc                                                                      <  2:2764432/91‑1 (MQ=255)

                      aaaCTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATc                                                                      <  1:2983909/91‑1 (MQ=255)

                        aCTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCaa                                                                    >  1:1521016/1‑91 (MQ=255)

                        aCTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCaa                                                                    <  2:2061739/91‑1 (MQ=255)

                        aCTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCaa                                                                    <  2:3832715/91‑1 (MQ=255)

                           gATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTAGAATCTTCTCTGCTGATTGATCAATTa                                                                 <  2:3280154/91‑1 (MQ=255)

                           gATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTa                                                                 <  1:3273122/91‑1 (MQ=255)

                            aTTTCTCAGTTGGTAACGGAATTGTTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTAc                                                                <  2:3675313/91‑1 (MQ=255)

                            aTTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTAc                                                                >  2:1349902/1‑91 (MQ=255)

                             tttCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTAcg                                                               >  2:1648247/1‑91 (MQ=255)

                               tctcAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTAcgcg                                                             <  2:2658570/91‑1 (MQ=255)

                               tctcAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTAcgcg                                                             >  2:1885475/1‑91 (MQ=255)

                                ctcAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCgg                                                            <  2:1032384/91‑1 (MQ=255)

                                 tcAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATCACGCGGt                                                           <  1:622762/91‑1 (MQ=255)

                                   aGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGa                                                         <  1:3443232/91‑1 (MQ=255)

                                   aGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGa                                                         >  2:3163377/1‑91 (MQ=255)

                                   aGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGa                                                         >  1:2752548/1‑91 (MQ=255)

                                   aGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGCGa                                                         >  2:2355846/1‑91 (MQ=255)

                                    gTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGAt                                                        >  2:2118300/1‑91 (MQ=255)

                                     ttGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATc                                                       <  1:671674/91‑1 (MQ=255)

                                     ttGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATc                                                       <  2:1589716/91‑1 (MQ=255)

                                            cGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCt                                                >  1:808717/1‑91 (MQ=255)

                                             ggAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCtt                                               >  1:2104861/1‑91 (MQ=255)

                                               aaTTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCtttt                                             <  1:3092487/91‑1 (MQ=255)

                                               aaTTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCtttt                                             <  2:399309/91‑1 (MQ=255)

                                                aTTGGTCCAGAAACATTTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTa                                            >  1:3634387/1‑91 (MQ=255)

                                                 ttGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTaa                                           <  1:2191928/91‑1 (MQ=255)

                                                 ttGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTaa                                           <  2:3653550/91‑1 (MQ=255)

                                                 ttGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTaa                                           <  1:1607008/91‑1 (MQ=255)

                                                  tGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAt                                          >  1:3004006/1‑91 (MQ=255)

                                                     tCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctg                                       <  2:2434122/91‑1 (MQ=255)

                                                      ccAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctga                                      >  1:1057742/1‑91 (MQ=255)

                                                      ccAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctga                                      >  1:2021955/1‑91 (MQ=255)

                                                      ccAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctga                                      <  1:229616/91‑1 (MQ=255)

                                                       cAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctgat                                     >  1:322403/1‑91 (MQ=255)

                                                       cAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctgat                                     >  1:8055/1‑91 (MQ=255)

                                                         GAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctgattc                                   <  1:3548813‑M1/91‑1 (MQ=255)

                                                          aagcATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAGTTGCGCGGTGATCATAGGCTTTTTAtctgattct                                  <  2:581380/88‑1 (MQ=255)

                                                           aacagcgaaacgttctggtgcagatgtttctACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctgattctg                                 >  1:3912164‑M2/32‑91 (MQ=255)

                                                           aacagcgaaacgttctggtgcagatgcttctACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctgattctg                                 >  2:2239723‑M2/32‑91 (MQ=255)

                                                             CATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctgattctgat                               >  1:2979431‑M1/1‑91 (MQ=255)

                                                             CATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAAtctgattctgat                               >  2:3140341‑M1/1‑91 (MQ=255)

                                                              agcgaaacgttctggtgcagatgtttctACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATctgattctgatt                              >  1:3937703‑M2/29‑91 (MQ=255)

                                                              ATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATctgattctgatt                              <  2:138728‑M1/91‑1 (MQ=255)

                                                              ATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATctgattctgatt                              >  1:1779313‑M1/1‑91 (MQ=255)

                                                              ATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATctgattctgatt                              >  2:777988‑M1/1‑91 (MQ=255)

                                                               tCTGCACCCGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTTATCATAAGCTTTTAATCTGATTCTGAttt                             <  2:3435741/91‑1 (MQ=255)

                                                               tCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGAttt                             >  2:419950/1‑91 (MQ=255)

                                                               tCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGAttt                             <  2:1821897/91‑1 (MQ=255)

                                                               tCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGAttt                             <  1:3897505/91‑1 (MQ=255)

                                                               tCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGAttt                             <  1:1575303/91‑1 (MQ=255)

                                                               tCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGAttt                             <  1:3751731/91‑1 (MQ=255)

                                                               gcgaaacgttctggtgcagatgtttctACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGAttt                             >  1:310420‑M2/28‑91 (MQ=255)

                                                                 tGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGAttttt                           >  2:525349/1‑91 (MQ=255)

                                                                  ggaCCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGAtttttt                          >  2:2976406/3‑91 (MQ=255)

                                                                  gCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGAtttttt                          <  2:2583236/91‑1 (MQ=255)

                                                                   cACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTatttg                         <  2:287450/91‑1 (MQ=255)

                                                                    aCCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTttttgt                        <  2:3385808/91‑1 (MQ=255)

                                                                       aGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTttttgtttt                     >  2:551018/1‑91 (MQ=255)

                                                                         ctggtgcagatgtttctACAATATTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGc                   <  2:3191085‑M2/74‑1 (MQ=255)

                                                                         aaCGTTTCGGTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGc                   <  1:3787505/91‑1 (MQ=255)

                                                                         aaCGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGc                   <  1:1120718/91‑1 (MQ=255)

                                                                         aaCGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGc                   <  1:1015864/91‑1 (MQ=255)

                                                                          aCGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGcc                  <  1:1969126/91‑1 (MQ=255)

                                                                          aCGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTCTTTTGcc                  >  2:3507573/1‑91 (MQ=255)

                                                                          aCGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATATGATTCTGATTTTTTGTTTTGcc                  <  1:107712/91‑1 (MQ=255)

                                                                           cGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCa                 >  1:1759175/1‑91 (MQ=255)

                                                                            gTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCAt                <  2:1502203/91‑1 (MQ=255)

                                                                            gTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCAt                >  1:3591578/1‑91 (MQ=255)

                                                                               tCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAAt             <  2:1994301/91‑1 (MQ=255)

                                                                                 gCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAAttt           <  1:2659254/91‑1 (MQ=255)

                                                                                     tttctACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTccc       <  1:1852924‑M2/86‑1 (MQ=255)

                                                                                       tctACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCcctc     <  1:1936435‑M2/88‑1 (MQ=255)

                                                                                        ctACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCcctcc    >  1:1314144‑M2/3‑91 (MQ=255)

                                                                                         tACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCcctcct   <  1:418250‑M2/90‑1 (MQ=255)

                                                                                         tACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCcctcct   <  1:72959‑M2/90‑1 (MQ=255)

                                                                                          aCAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCCtt  >  1:2903334/1‑91 (MQ=255)

                                                                                          aCAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCCtt  >  1:221547/1‑91 (MQ=255)

                                                                                          aCAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATGTTTTGTTTTGCCATAATTTTCCCTCCtt  <  2:3060750/91‑1 (MQ=255)

TGCACGGCACGGATGATTGTGTAAACTGATTTCTCAGTTGGTAACGGAATTGGTCCAGAAACATCTGCACCAGAACGTTTCGCTGTTTCTACAATCTTCTCTGCTGATTGATCAATTACGCGGTGATCATAAGCTTTTAATCTGATTCTGATTTTTTGTTTTGCCATAATTTTCCCTCCTT  >  USA300TCH1516_ALE/2371337‑2371517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.