| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2440041 = | 155 (0.760) | 8 (0.050) | 6/136 | NT | 5.6% | intergenic (+2/+64) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | 2440099 = | 136 (0.790) | intergenic (+60/+6) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
AACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2440142‑2440041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTG > USA300TCH1516_ALE/2440099‑2440188 AACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑G > 2:2714218/1‑91AACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑G < 2:1389509/91‑1 CAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GAT > 1:1213546/1‑91 AAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATG > 1:1515527/1‑91 AATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGT < 1:2597122/91‑1 ATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTG > 1:131203/1‑91 TGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGT > 2:2821168/1‑91 TGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGT < 1:2675827/91‑1 GGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTC < 1:1344971/91‑1 GGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTC < 1:565241/91‑1 GGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTC > 1:356983/1‑91 GTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT > 2:914988/1‑91 GTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT > 2:914974/1‑91 GTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT < 2:238702/91‑1 GTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT < 2:1777275/91‑1 GTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT > 1:864296/1‑91 TTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT > 1:1647646/1‑91 TTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT < 2:31150/91‑1 TTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT < 1:2491155/91‑1 TGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTT < 2:3101499/91‑1 TGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTT < 2:1443947/91‑1 TGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTT < 2:3265932/91‑1 TGAGGATCAATCGGCCGAAGATAAATAATACAAAAAAAGACACGTCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTT < 2:2870938/91‑1 GAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT > 1:1143217/1‑91 GAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT < 1:3854326/91‑1 AAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCT > 1:727423/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATATATCTTCGGACGATTGATCCTCAACCAT > 1:2348143/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTT > 1:911289/1‑91 CACTATACGCAATCATTGTAAATGATCATCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTG > 2:2608814/1‑91 TACGCAATCATTGTAAATGATCATCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAA > 1:2226312/1‑91 TACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAT > 2:1426210/1‑91 TACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAT > 2:1426254/1‑91 CAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTTTTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTT > 2:505481/1‑91 GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCT > 2:712231/1‑91 ATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTA > 1:1440225/1‑91 ATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTA < 2:3490311/91‑1 ATGTGTC‑TTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTCGTGGTACTGTCATACCTAC < 2:3455255/91‑1 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC < 2:306587/91‑1 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC < 2:2379837/91‑1 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC < 1:215435/91‑1 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC > 1:3113352/1‑91 GTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACT < 2:58756/91‑1 GTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACT < 1:2947360/91‑1 GTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATGTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACT < 2:1494964/91‑1 TGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTA > 2:3257510/1‑91 TGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTA < 1:843818/91‑1 TGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTA > 1:728899/1‑91 TCTTTTTTTTTTTTTTTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACA > 2:1777117/1‑91 TCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCTACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACA < 2:2350046/91‑1 TCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACA > 1:571973/1‑91 TCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACA > 1:2650585/1‑91 CTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAA < 1:3371335/91‑1 TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAAC < 1:2122726/91‑1 TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAAC > 1:388912/1‑91 TTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTT < 2:2838664/91‑1 TTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTT > 2:3869368/1‑91 TTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTG < 1:2541011/91‑1 TTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTG < 1:2541245/91‑1 AACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2440142‑2440041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTG > USA300TCH1516_ALE/2440099‑2440188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |