| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2440041 = | 155 (0.760) | 8 (0.050) | 6/136 | NT | 5.6% | intergenic (+2/+64) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | 2440099 = | 136 (0.790) | intergenic (+60/+6) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
Only 100 of 283 total aligned reads displayed.
AATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTC > USA300TCH1516_ALE/2439951‑2440131 | caagttgtagtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaa < 1:2541245‑M1/1‑1 (MQ=255) aagttgtagtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaaa > 2:3869368‑M1/90‑91 (MQ=255) aTTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAA < 2:275117‑M1/91‑1 (MQ=255) ttACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA > 1:2264723‑M1/1‑91 (MQ=255) ttACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA > 1:3703183‑M1/1‑91 (MQ=255) ttACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA < 2:3621473‑M1/91‑1 (MQ=255) tgtagtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGa > 1:2650585‑M1/86‑91 (MQ=255) tACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGAC < 1:2870750‑M1/91‑1 (MQ=255) tACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATCATAGAGCGTCATCTATGAGCAAAGCTCGTATATCATAATCACAGAC > 2:63747‑M1/1‑91 (MQ=255) tagtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGaca < 1:843818‑M1/8‑1 (MQ=255) aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 2:76221‑M1/1‑91 (MQ=255) aCATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCATCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA < 2:2674452‑M1/91‑1 (MQ=255) cATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACAC > 1:1124369‑M1/1‑91 (MQ=255) agtaggtatgacagtaccacaagttcgtgaagcatttgaacacatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGacac < 2:1494964‑M1/9‑1 (MQ=255) agtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGacac < 1:2947360‑M1/9‑1 (MQ=255) agtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGacac < 2:58756‑M1/9‑1 (MQ=255) gtaggtatgacagtaccacgagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAA‑GACACAt < 2:3455255‑M1/10‑1 (MQ=255) gtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGAcaca < 1:215435‑M1/10‑1 (MQ=255) gtaggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGAcaca < 2:306587‑M1/10‑1 (MQ=255) aTACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 1:764894‑M1/1‑91 (MQ=255) aTACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 2:1689504‑M1/1‑91 (MQ=255) taggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACAt > 1:1440225‑M1/81‑91 (MQ=255) aggtatgacagtaccacaagttcgtgaagcatttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATc > 2:712231‑M1/80‑91 (MQ=255) aCGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC < 2:1103119‑M1/91‑1 (MQ=255) aCGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC < 2:2515152‑M1/91‑1 (MQ=255) cGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGCTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCt < 1:3943916/91‑1 (MQ=255) gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACg > 1:1342279/1‑91 (MQ=255) aaCTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgat < 1:543904/91‑1 (MQ=255) aaCTAGAAATATCGACATGCTATCTGCCAATGATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACgat < 2:2927737/91‑1 (MQ=255) gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCa > 2:800810/1‑91 (MQ=255) aaaTATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAt > 2:2541245/1‑91 (MQ=255) atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAttt > 2:3324412/1‑91 (MQ=255) atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAttt > 2:2017982/1‑91 (MQ=255) tatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTa > 1:1153788/1‑91 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc < 2:3518319/91‑1 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc < 2:2615739/91‑1 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc < 1:275299/91‑1 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc < 2:369643/91‑1 (MQ=255) tCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACa > 1:1619496/1‑91 (MQ=255) cGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACaa < 1:1211607/91‑1 (MQ=255) gACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATATGATGATCATTTACAAt < 1:3889147/91‑1 (MQ=255) gACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAAt < 2:2813742/91‑1 (MQ=255) aCATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATg > 2:1383178/1‑91 (MQ=255) aCATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATg > 2:818756/1‑91 (MQ=255) cATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGa > 1:3942691/1‑91 (MQ=255) cATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGa > 1:696677/1‑91 (MQ=255) ttCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGAtt < 2:289466/91‑1 (MQ=255) aagcatttgaacaaatggttgaggatcaatcgtccgaagataaataaaacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTg > 2:505481‑M1/54‑91 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCg < 1:971568/91‑1 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGTTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGta < 2:973783/91‑1 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGta < 2:3267451/91‑1 (MQ=255) atttgaacaaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTGCGta > 2:1426210‑M1/50‑91 (MQ=255) gCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATtatacgcaatcattgtaaatgatcatcgtatag < 2:1145888‑M1/91‑34 (MQ=255) ccAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtata < 1:3724068‑M1/91‑35 (MQ=255) cAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTg < 2:3096799‑M2/91‑2 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTga > 1:586549‑M2/1‑89 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTga < 1:1578495‑M2/91‑3 (MQ=255) aTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgat > 2:3235599‑M2/1‑88 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatg < 2:2131468‑M1/91‑39 (MQ=255) ttATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatg < 1:2418413‑M2/91‑5 (MQ=255) aaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtg > 1:911289‑M1/42‑91 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgt > 1:3363550‑M2/1‑86 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtg < 1:1076556‑M1/91‑41 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtg < 1:2797057‑M2/91‑7 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtg > 2:3319611‑M2/1‑85 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtg < 2:1703159‑M2/91‑7 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc < 2:989610‑M2/91‑9 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc < 1:1949191‑M2/91‑9 (MQ=255) gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct > 1:615895‑M2/1‑82 (MQ=255) aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctt > 1:1001857‑M2/1‑81 (MQ=255) aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctt < 1:3220737‑M2/91‑11 (MQ=255) tCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttt < 2:2290886‑M2/91‑12 (MQ=255) tCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttt < 1:1815633‑M2/91‑12 (MQ=255) tCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtctttt > 2:1268657/1‑91 (MQ=255) cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt > 2:1812021/1‑91 (MQ=255) cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttg > 1:2065389/1‑90 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt > 1:2212269/1‑91 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt > 1:1346470/1‑91 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt < 1:1627881/91‑1 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAAAAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattat < 2:1771345‑M1/91‑52 (MQ=255) cTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGta > 1:1405883/1‑91 (MQ=255) gCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt < 1:3604182/91‑1 (MQ=255) aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttatttat > 1:3656729/1‑91 (MQ=255) aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttatttatt > 1:2894036/1‑90 (MQ=255) aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATc > 2:3809539/1‑91 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 1:1388304/1‑91 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 2:2406147/1‑91 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 2:2699356/1‑91 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 2:2786210/1‑91 (MQ=255) tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCg < 2:233866/91‑1 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:3056665/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTCGTATTATTTATCTTCgg > 1:3392079/1‑91 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa > 1:1662755/1‑91 (MQ=255) tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGAc > 2:1886835/1‑91 (MQ=255) tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt < 1:2699356/91‑1 (MQ=255) tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt < 1:309018/91‑1 (MQ=255) cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg < 2:539547/91‑1 (MQ=255) ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGa > 1:3118809/1‑91 (MQ=255) aataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATc > 2:258880/1‑91 (MQ=255) AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc < 1:3854326‑M1/91‑1 (MQ=255) | AATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTC > USA300TCH1516_ALE/2439951‑2440131 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |