BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2440041 =	155 (0.760)	8 (0.050)	6/136	NT	5.6%	intergenic (+2/+64)	USA300HOU_RS12570/malP	hypothetical protein/PTS system maltose‑specific EIICB component
*	?	USA300TCH1516_ALE	2440099 =	136 (0.790)	8 (0.050)	6/136	NT	5.6%	intergenic (+60/+6)	USA300HOU_RS12570/malP	hypothetical protein/PTS system maltose‑specific EIICB component

Only 100 of 213 total aligned reads displayed.

GTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGG  >  USA300TCH1516_ALE/2440009‑2440189

 tCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑tttttt                                                                                           >  2:349022/1‑91 (MQ=255)

 tCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑tctttt                                                                                           >  2:1268657/1‑91 (MQ=255)

  cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑ttttttt                                                                                          >  2:1812021/1‑91 (MQ=255)

    tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGt                                                                                        >  1:2211683/1‑91 (MQ=255)

    tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGt                                                                                        >  1:1346470/1‑91 (MQ=255)

    tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGt                                                                                        <  1:1627881/91‑1 (MQ=255)

        tGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGtatta                                                                                    >  2:1724131/1‑91 (MQ=255)

         gggaaaaGCTCGTATATCATAATAAAAGAAACATCTATACGATGATCATTTACAATGATTGAGTTTAGTGATGTGTC‑TTTTTTTGtattat                                                                                   <  1:1062247/87‑1 (MQ=255)

         gAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGtattat                                                                                   <  1:2646362/91‑1 (MQ=255)

          aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTattatt                                                                                  <  2:3309405/91‑1 (MQ=255)

           gCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTAttattt                                                                                 <  1:3604182/91‑1 (MQ=255)

             aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTAttatttat                                                                               >  1:1315105/1‑91 (MQ=255)

             aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTAttatttat                                                                               >  1:3656729/1‑91 (MQ=255)

              aaGCTCGTATATCATAATAAAAGACTCATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATc                                                                              <  1:3690935/91‑1 (MQ=255)

              aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATc                                                                              >  2:2805158/1‑91 (MQ=255)

              aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATc                                                                              >  2:3809539/1‑91 (MQ=255)

              aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATc                                                                              <  1:3703685/91‑1 (MQ=255)

               aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCt                                                                             >  2:2406147/1‑91 (MQ=255)

               aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCt                                                                             >  2:2699356/1‑91 (MQ=255)

               aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCt                                                                             >  1:1388304/1‑91 (MQ=255)

                gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTTGTATTATTTATCt                                                                             >  1:2885395/1‑91 (MQ=255)

                  tCGTAGATCATAGTAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCg                                                                          <  2:3639145/91‑1 (MQ=255)

                   cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCgg                                                                         >  1:2781768/1‑91 (MQ=255)

                   cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCgg                                                                         >  1:3056665/1‑91 (MQ=255)

                   cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTCGTATTATTTATCTTCgg                                                                         >  1:3392079/1‑91 (MQ=255)

                    gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGa                                                                        >  1:3856603/1‑91 (MQ=255)

                    gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGa                                                                        >  1:1402971/1‑91 (MQ=255)

                     tataTCATAATAAAAGACGCATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGAc                                                                       <  1:3168599/91‑1 (MQ=255)

                     tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGAc                                                                       <  1:2798440/91‑1 (MQ=255)

                     tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGAc                                                                       >  2:1886835/1‑91 (MQ=255)

                     tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGAc                                                                       <  2:700554/91‑1 (MQ=255)

                     tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTCTATTATTTATCCTCGGAc                                                                       >  2:814936/1‑91 (MQ=255)

                         tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGAtt                                                                   <  1:2699356/91‑1 (MQ=255)

                         tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGAtt                                                                   <  1:309018/91‑1 (MQ=255)

                          cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTg                                                                  <  2:3078163/91‑1 (MQ=255)

                           ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGa                                                                 >  1:3118809/1‑91 (MQ=255)

                             aataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATc                                                               >  2:258880/1‑91 (MQ=255)

                              ataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATcc                                                              <  2:712673/91‑1 (MQ=255)

                               taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCt                                                             >  1:1850406/1‑91 (MQ=255)

                                aaaaagacacatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCt                                                             >  1:727423‑M2/60‑91 (MQ=255)

                                AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc                                                            >  1:1143217‑M1/1‑91 (MQ=255)

                                 AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa                                                           <  2:1443947‑M1/91‑1 (MQ=255)

                                 AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGACGTGTC‑TTTTTTTGTATTATTTATCTTCGGCCGATTGATCCTCa                                                           <  2:2870938‑M1/91‑1 (MQ=255)

                                  AAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa                                                          >  1:1647646‑M1/1‑91 (MQ=255)

                                  AAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa                                                          <  1:2491155‑M1/91‑1 (MQ=255)

                                  AAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa                                                          <  2:31150‑M1/91‑1 (MQ=255)

                                   AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc                                                         <  2:1777275‑M1/91‑1 (MQ=255)

                                   AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc                                                         >  2:914988‑M1/1‑91 (MQ=255)

                                     ACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa                                                       <  1:2675827‑M1/91‑1 (MQ=255)

                                      CACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt                                                      >  1:131203‑M1/1‑91 (MQ=255)

                                       cacatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATATATCTTCGGACGATTGATCCTCAACCAt                                                      >  1:2348143‑M2/53‑91 (MQ=255)

                                         catcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAttt                                                    >  1:911289‑M2/51‑91 (MQ=255)

                                         ATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTg                                                   >  1:1213546‑M1/1‑91 (MQ=255)

                                           CTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt                                                 <  2:1389509‑M1/91‑1 (MQ=255)

                                            tataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTc                                                <  1:3455383/91‑1 (MQ=255)

                                              taCGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCaa                                              <  2:3225154/91‑1 (MQ=255)

                                               tacgcaatcattgtaaatgatcatcgtatagtgatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCaa                                              >  1:2226312‑M2/45‑91 (MQ=255)

                                               aCGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCaaa                                             >  1:652385/1‑91 (MQ=255)

                                                cGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAt                                            <  1:739050/91‑1 (MQ=255)

                                                cGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAt                                            >  1:1363289/1‑91 (MQ=255)

                                                 tacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAt                                            >  2:1426254‑M2/43‑91 (MQ=255)

                                                  atgatCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGc                                          >  1:2654107/1‑91 (MQ=255)

                                                  atgatCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGc                                          >  2:2281541/1‑91 (MQ=255)

                                                     caatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTTTTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCtt                                        >  2:505481‑M2/39‑91 (MQ=255)

                                                     atCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTc                                       <  1:3825489/91‑1 (MQ=255)

                                                      tCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                                      >  1:2580756/1‑91 (MQ=255)

                                                      tCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                                      >  1:801512/1‑91 (MQ=255)

                                                       cATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                                     >  2:2134852/1‑91 (MQ=255)

                                                       cATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                                     <  1:3893289/91‑1 (MQ=255)

                                                        aTTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTCTTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACg                                    <  2:1754774/91‑1 (MQ=255)

                                                        aTTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACg                                    >  1:1098772/1‑91 (MQ=255)

                                                           tACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATTCTTCACGAAc                                 >  2:3871147/1‑91 (MQ=255)

                                                            aCAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACt                                <  2:2084340/91‑1 (MQ=255)

                                                              aaTGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtg                              >  1:1721594/1‑91 (MQ=255)

                                                               aagATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTGAACCATTTGTTTCAATGATTCCCGCACTtgt                             >  2:2548856/3‑91 (MQ=255)

                                                               aTGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtgt                             <  2:649426/91‑1 (MQ=255)

                                                                tGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtgtg                            <  2:1337137/91‑1 (MQ=255)

                                                                tGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtgtg                            <  2:1027804/91‑1 (MQ=255)

                                                                 gATTGCGTATAGTGATGTGTC‑TTTTTTTTTTTTTTTTTTCTTCGGACGATTGATCCTCAACCATTTGTTTAAATGCTTCTCGAACTTGTgg                           >  2:2914824/1‑91 (MQ=255)

                                                                 gATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg                           <  2:1121975/91‑1 (MQ=255)

                                                                 gATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg                           <  2:2779670/91‑1 (MQ=255)

                                                                 gATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg                           <  2:315748/91‑1 (MQ=255)

                                                                     gCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACt                       >  2:3279437/1‑91 (MQ=255)

                                                                       gTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGt                     >  1:1550645/1‑91 (MQ=255)

                                                                       gTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGt                     >  2:113989/1‑91 (MQ=255)

                                                                       gTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGt                     >  2:798512/1‑91 (MQ=255)

                                                                       gTATAGTGATGAGTC‑TTTTTTTGCATTATTTATCTTCGGACGATTGATCGTCAACCATTGGTTCAAATGCTTCACGAACTTGTGGTACTGt                     <  2:3010341/91‑1 (MQ=255)

                                                                                atgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACcta             >  1:1440225‑M2/12‑91 (MQ=255)

                                                                                 tgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac            <  1:215435‑M2/81‑1 (MQ=255)

                                                                                 tgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac            <  2:306587‑M2/81‑1 (MQ=255)

                                                                                 tgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac            <  2:2379837‑M2/81‑1 (MQ=255)

                                                                                 atgtgtctttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTCGTGGTACTGTCATACctac            <  2:3455255‑M2/81‑1 (MQ=255)

                                                                                  gtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctact           <  2:58756‑M2/82‑1 (MQ=255)

                                                                                   tgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctacta          <  1:843818‑M2/83‑1 (MQ=255)

                                                                                     tcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACa        >  1:571973‑M2/7‑91 (MQ=255)

                                                                                      cttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACaa       <  1:3371335‑M2/86‑1 (MQ=255)

                                                                                       ttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAAc      >  1:388912‑M2/5‑91 (MQ=255)

                                                                                       ttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAAc      <  1:2122726‑M2/87‑1 (MQ=255)

                                                                                          tTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTg   <  1:2541245‑M2/90‑1 (MQ=255)

                                                                                           tttGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTgg  >  1:2998147/1‑91 (MQ=255)

GTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTC‑TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTTGG  >  USA300TCH1516_ALE/2440009‑2440189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.