| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2440052 | 151 (0.740) | 12 (0.070) | 8/136 | NT | 8.3% | intergenic (+13/+53) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | = 2440086 | 136 (0.790) | intergenic (+47/+19) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2439952‑2440052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG < USA300TCH1516_ALE/2440086‑2439997 ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAA < 2:275129/91‑1ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAA < 2:275445/91‑1ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAA < 2:692151/91‑1ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAA < 2:275117/91‑1 TTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAA > 1:3516330/1‑91 GTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAG < 1:2936042/91‑1 TTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA < 2:3621473/91‑1 TTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA > 1:2264723/1‑91 TTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA > 1:1791504/1‑91 TTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGA > 1:3703183/1‑91 TACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGAC < 1:2870689/91‑1 TACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGAC < 1:2870750/91‑1 TACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATCATAGAGCGTCATCTATGAGCAAAGCTCGTATATCATAATCACAGAC > 2:63747/1‑91 ACATACGATTGCAACTAGAAATATCGATATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 2:355647/1‑91 ACATACGATTGCAACTAGAAATATCGATATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 2:2449071/1‑91 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 2:3238668/1‑91 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 2:76221/1‑91 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA > 2:1871885/1‑91 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCATCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA < 2:2674452/91‑1 ACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCATCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACA < 2:2674484/91‑1 CATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACAC > 2:853519/1‑91 CATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACAC > 1:1529707/1‑91 CATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACAC > 1:1124369/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 1:764894/1‑91 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 2:560309/91‑1 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA < 1:3722074/91‑1 ATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACA > 2:1689504/1‑91 TACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT > 2:3824908/1‑91 TACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT > 1:3802042/1‑91 TACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT > 2:1690507/1‑91 acaATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC < 2:1225826/88‑1 ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC < 2:1103119/91‑1 ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC < 2:2515152/91‑1 GCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT‑‑CTATACGCAATCATTGTAAATGATCATCGTATAG < 2:1145888/91‑1 GCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACAT‑‑CTATACGCAAGCATTGTAAATGATCATCGTATAG < 2:2053400/91‑1 CCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA < 1:3724068/91‑1 CAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAG < 1:194997/91‑1 TTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATG < 2:2131468/91‑1 TATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGT < 1:2125387/91‑1 TATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGT < 1:3136243/91‑1 ATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTG < 1:1076556/91‑1 ATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTG < 1:1076574/91‑1 GATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCT < 2:2807223/91‑1 TCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTT < 1:3283914/91‑1 TCTATGAGCAAAGCTCGTATATCATAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTAT < 2:1771345/91‑1 gAAAGACAGATCACTAGACGGAATCATTGTAAATGATCATCGTATAGAGGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACG < 1:1433226/90‑1 AAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGA < 1:1815633/91‑1 AAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGA < 2:773894/91‑1 AAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGA < 2:2291059/91‑1 AAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGA < 2:2290886/91‑1 AAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGAT < 1:3220737/91‑1 AAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGAT > 1:1001857/1‑91 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC > 1:615895/1‑91 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC < 2:2555415/91‑1 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC < 1:402789/91‑1 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC < 1:5584/91‑1 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC > 1:615752/1‑91 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC > 1:615768/1‑91 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATC > 2:1353119/1‑91 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT > 1:1387253/1‑91 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 2:1423402/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT > 2:2716666/1‑91 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT > 2:2716678/1‑91 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 2:989610/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 1:1949191/91‑1 GACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCT < 1:1949290/91‑1 ACACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTA > 2:2908916/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT < 1:2797057/91‑1 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT > 2:3319611/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT < 1:2230421/91‑1 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT < 1:872395/91‑1 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT < 2:1703159/91‑1 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT > 2:1393202/1‑91 CACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATCTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTAT < 1:3943673/91‑1 ACATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATA > 1:3363550/1‑91 CATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAA < 1:2418413/91‑1 ATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAAT > 2:3235599/1‑91 ATCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAAT < 2:3412493/91‑1 TCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATT < 2:3627546/91‑1 TCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATT < 1:1578495/91‑1 TCACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATT > 1:586549/1‑91 CACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG < 2:3096799/91‑1 CACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG > 1:3930947/1‑91 CACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG > 2:996064/1‑91 CACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG > 2:996273/1‑91 ATTGTTACATACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2439952‑2440052‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagacacatcACTATACGCAATCATTGTAAATGATCATCGTATAGATGTGTCTTTTATTATGATATACGAGCTTTGCTCATAGATGACGATCTATAATTG < USA300TCH1516_ALE/2440086‑2439997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |