| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2440052 | 151 (0.740) | 12 (0.070) | 8/136 | NT | 8.3% | intergenic (+13/+53) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | = 2440086 | 136 (0.790) | intergenic (+47/+19) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
Only 100 of 302 total aligned reads displayed.
ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTT > USA300TCH1516_ALE/2439962‑2440142 | aCGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATC < 2:1103119‑M1/91‑1 (MQ=255) cGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGCTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCt < 1:3943916/91‑1 (MQ=255) gATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCta < 1:3112279/91‑1 (MQ=255) gATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCta < 2:1981694/91‑1 (MQ=255) aTTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCtat < 2:978670/91‑1 (MQ=255) gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACg > 1:2919358/1‑91 (MQ=255) gCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACg > 1:1342279/1‑91 (MQ=255) gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCa > 2:1855462/1‑91 (MQ=255) gAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCa > 2:800810/1‑91 (MQ=255) aaaTATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAt > 2:2540981/1‑91 (MQ=255) atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAttt > 2:3324285/1‑91 (MQ=255) atatCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCAttt > 1:510546/1‑91 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc < 2:3518319/91‑1 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc < 2:2615739/91‑1 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc > 1:1770196/1‑91 (MQ=255) atCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTAc < 1:275299/91‑1 (MQ=255) tCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACa > 1:1619828/1‑91 (MQ=255) gACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATATGATGATCATTTACAAt < 1:3889279/91‑1 (MQ=255) aCATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATg > 2:818756/1‑91 (MQ=255) cATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGa > 1:3942691/1‑91 (MQ=255) cATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGa > 1:696677/1‑91 (MQ=255) cTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGc > 2:1668993/1‑91 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCg > 1:3361908/1‑91 (MQ=255) tATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCg < 1:971568/91‑1 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGta > 2:3946330/1‑91 (MQ=255) tCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATATATACGATGATCATTTACAATGATTGCGta > 1:1602677/1‑91 (MQ=255) tCTGCCAATTATAGATAGTCATCTATGAGCAAAGCTCGTATATCATACTATAAGACACATCTATACGATGATCATTTACAATGATTGCGta > 2:5248/1‑91 (MQ=255) tGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGtata < 2:577745/91‑1 (MQ=255) gCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATtatacgcaatcattgtaaatgatcatcgtatag < 2:1145888‑M1/91‑34 (MQ=255) cAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatag < 1:194997‑M1/91‑36 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTga > 1:586549‑M2/1‑89 (MQ=255) aaTTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTga < 2:3627546‑M2/91‑3 (MQ=255) aaatggttgaggatcaatcgtccgaagataaataatacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGAtg > 1:911289‑M1/42‑91 (MQ=255) tataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgt < 1:2125387‑M1/91‑40 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtg < 1:1076556‑M1/91‑41 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtg < 2:1703159‑M2/91‑7 (MQ=255) ataGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtg < 1:2230421‑M2/91‑7 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc < 2:1423402‑M2/91‑9 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc > 1:1387253‑M2/1‑83 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc > 2:2716666‑M2/1‑83 (MQ=255) aGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtc < 1:1949191‑M2/91‑9 (MQ=255) gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct > 2:1353119‑M2/1‑82 (MQ=255) gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct < 1:5584‑M2/91‑10 (MQ=255) gATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtct > 1:615895‑M2/1‑82 (MQ=255) aTCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctt < 1:3220737‑M2/91‑11 (MQ=255) tCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttt < 2:2291059‑M2/91‑12 (MQ=255) cGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACCTCTATACGATGATCATTTACAATGATTCCGTCTAGTgatctgtctttc < 1:1433226‑M2/91‑13 (MQ=255) tCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtttttt < 2:2968296/91‑1 (MQ=255) tCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCtctttt > 2:1268657/1‑91 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt > 1:1346470/1‑91 (MQ=255) tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt > 1:2212269/1‑91 (MQ=255) tATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtat > 2:3218016/1‑91 (MQ=255) gAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtattat < 1:2646362/91‑1 (MQ=255) aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTattatt > 2:2554168/1‑91 (MQ=255) cAAAGCTCGTAGATCATAATAAAAGGCACATCGATACGATGATCATGTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattta < 2:945298/91‑1 (MQ=255) aaaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttatttat > 1:3656729/1‑91 (MQ=255) aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATc < 1:3703685/91‑1 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 2:2406147/1‑91 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 2:2786210/1‑91 (MQ=255) aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt > 2:2699356/1‑91 (MQ=255) cTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTc > 1:2690262/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:288359/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:1210965/1‑91 (MQ=255) cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg > 1:3056665/1‑91 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa < 2:1442789/91‑1 (MQ=255) gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa > 1:1402971/1‑91 (MQ=255) tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGAc < 2:700554/91‑1 (MQ=255) atatCATAATAAAAGCCACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACg > 1:3374500/1‑91 (MQ=255) atatCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACg > 2:3313283/1‑91 (MQ=255) cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg < 2:3078163/91‑1 (MQ=255) ataataAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtctttttttatgatatacgagctttgctcataga < 2:1771345‑M2/91‑41 (MQ=255) aataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATc > 2:258880/1‑91 (MQ=255) taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt > 1:1850406/1‑91 (MQ=255) taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt > 2:3700876/1‑91 (MQ=255) AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc > 1:1143217‑M1/1‑91 (MQ=255) AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc < 1:3854326‑M1/91‑1 (MQ=255) aaaGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacga < 2:2290886‑M1/91‑81 (MQ=255) aaaGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacga < 2:773894‑M1/91‑81 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 2:3101499‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa < 2:3265932‑M1/91‑1 (MQ=255) AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGACGTGTCTTTTTTTGTATTATTTATCTTCGGCCGATTGATCCTCa < 2:2870938‑M1/91‑1 (MQ=255) aaGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgat > 1:1001857‑M1/1‑10 (MQ=255) AAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa > 1:1647646‑M1/1‑91 (MQ=255) AAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa < 1:2491155‑M1/91‑1 (MQ=255) aGACACATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatc > 1:615768‑M1/1‑9 (MQ=255) aGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatc < 2:2807223‑M2/91‑49 (MQ=255) AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc > 1:864296‑M1/1‑91 (MQ=255) GACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAcc > 1:356983‑M1/1‑91 (MQ=255) acacATCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatcta > 2:2908916‑M1/1‑7 (MQ=255) cacaTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctat > 2:1393202‑M1/1‑6 (MQ=255) cacaTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctat < 1:2797057‑M1/91‑86 (MQ=255) cacaTCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctat < 1:1076574‑M2/91‑52 (MQ=255) CACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt > 1:131203‑M1/1‑91 (MQ=255) acaTCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctata < 1:3136243‑M2/91‑53 (MQ=255) caTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataa < 1:2418413‑M1/91‑88 (MQ=255) caTCTATACGATGATCATTTACAATGATTGCGTATAGTgatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataa < 2:2131468‑M2/91‑54 (MQ=255) CATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAttt > 1:1515527‑M1/1‑91 (MQ=255) aTCactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataat < 2:3412493‑M1/91‑89 (MQ=255) cactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattg > 2:996064‑M1/1‑1 (MQ=255) cTATACGATGATCATTTACAATGCTTGCGTATAGtgtgtcttttattatgatatacgagctttgctcatagatgacgatctataattggc < 2:2053400‑M2/91‑57 (MQ=255) | ACGATTGCAACTAGAAATATCGACATTCTATCTGCCAATTATAGATCGTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTT > USA300TCH1516_ALE/2439962‑2440142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |