| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2442806 = | 119 (0.580) | 17 (0.100) | 12/128 | NT | 14.2% | intergenic (+3/+55) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein |
| ? | USA300TCH1516_ALE | 2442855 = | 111 (0.680) | intergenic (+52/+6) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein | |||||
TTGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2442911‑2442806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATT > USA300TCH1516_ALE/2442855‑2442943 TTGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAA < 1:522600/91‑1TTGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAA > 1:386471/1‑91 TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT < 1:3715287/91‑1 TGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT < 1:3714885/91‑1 TGATATTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT > 1:1942683/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 2:414100/1‑91 GATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATC > 1:2337985/1‑91 GATGGTTGATAAGACGTACCACGCTCTCGAAACATCAACACAACAATAAAATGATAAAAGGAAGCTATGATAGGCTCAAGGCCATTAAATC > 2:94789/1‑91 GTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATA > 2:2477889/1‑91 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA < 2:3691741/91‑1 TTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA < 1:479559/91‑1 TTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGATCCAGGCCATCACATCATAAC > 2:2401683/1‑91 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT > 1:2291914/1‑91 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 2:298118/91‑1 TGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT < 2:3756837/91‑1 GATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTT < 1:566727/91‑1 TAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCC > 1:952089/1‑91 AAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCT > 2:3625901/1‑91 AGATGTACCACGTTATCGAAACATCACCACAACAATAAAATGATAAAAGGAAGTTATGATAAGCTCAAGGCCATTAAATCATAACTTCCTT > 2:2245461/1‑91 AGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATGGGCTCAAGGCCATTAAATCATAACTTCCTT < 1:2952446/91‑1 AGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT < 2:2700209/91‑1 AGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT > 2:2245275/1‑91 AGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTAATGATAGGCTCAAGGCCATTAAATCATAACTTCCTa > 2:3914801/1‑90 GATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATATGCTCAAGGCCATTAAATCATAACTTCCTTT < 2:436078/91‑1 GATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTT < 2:557834/91‑1 ATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT < 2:3716826/91‑1 GATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTA > 1:999360/1‑91 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCA > 1:2707162/1‑91 TATGATAGGCTCAAGGCCATTAAGTCATAACTTGCTTATATCATTTAATTGTTGTGTTGTTGTTTCGATAACGTGGTACATCTTATCAAAC > 1:3159439/1‑91 TATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAAC > 2:3799445/1‑91 TATGATAGGCTCAAGGCCATTAAATCATAACTTACTTATATCATTTTATTGTTGTGTTGCTGTTTCGATAACGTGGTACATCTTATCAAAC > 1:3160103/1‑91 ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTAGTACATCTTATCAAACA > 1:3389468/1‑91 TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACAT > 2:2948201/1‑91 GATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATC > 1:3111330/1‑91 ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCA > 1:994668/1‑91 ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCA > 1:994813/1‑91 TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAA > 1:667841/1‑91 TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAA > 1:3700509/1‑91 TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAA > 2:1121702/1‑91 GCTCAAGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTC > 2:307701/1‑91 AGGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAC > 2:3192343/1‑91 GGCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACC > 1:3702537/1‑91 GCCATTAAATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCA > 2:145652/1‑91 TCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATG > 1:2351588/1‑91 ATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGC < 1:2427080/91‑1 TAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCA < 2:1833088/91‑1 TAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCA < 1:2767817/91‑1 AACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCAT < 1:103731/91‑1 AACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCAT < 2:588935/91‑1 AACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCAT < 1:103418/91‑1 ACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATC > 1:3254307/1‑91 TTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCAT > 2:2292012/1‑91 TCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATG > 1:2218743/1‑91 CCTTTTATCATTTTATTGTTGTGTTGATGTTTTGATAACGTGGTACATCTTATCAAACATCAATTCGAATCCATGCACCATGGCATCATGA < 1:3378622/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 1:985796/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA < 1:565891/91‑1 CCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGA > 2:1913935/1‑91 CTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAT > 2:1589949/1‑91 TTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGCACATCTTATCAAACATCAATTCGAAAGCATGCACCATGGCATCATGATA > 2:3001491/1‑91 TTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGCAACCATGCACCATGGCATCATGATAT > 2:1488641/1‑91 TTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAT < 1:1661805/91‑1 TTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAT > 1:1597136/1‑91 TTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAT > 1:1463679/1‑91 TTATCATTTTATTGTTGTGTTGATGTTTCGATACCGTGGTACATCTTATCCAACATCAGTTCGAAACCAGGCACCAGGGCATCATGATATT < 1:507561/91‑1 TTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATT < 2:456417/91‑1 TTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATT < 2:2765805/91‑1 TTATCATTTTATCGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAGATT > 1:3058820/1‑91 TTGATGTTTGATAAGATGTACCACGTTATCGAAACATCAACACAACAATAAAATGATAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2442911‑2442806‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATT > USA300TCH1516_ALE/2442855‑2442943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |