BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2442806 =	119 (0.580)	17 (0.100)	12/128	NT	14.2%	intergenic (+3/+55)	glvR/USA300HOU_RS12585	HTH‑type transcriptional regulator GlvR/hypothetical protein
*	?	USA300TCH1516_ALE	2442855 =	111 (0.680)	17 (0.100)	12/128	NT	14.2%	intergenic (+52/+6)	glvR/USA300HOU_RS12585	HTH‑type transcriptional regulator GlvR/hypothetical protein

Only 100 of 207 total aligned reads displayed.

ATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCT  >  USA300TCH1516_ALE/2442766‑2442945

ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                                                           <  2:1602131/91‑1 (MQ=255)

ataATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTAt                                                                                           >  1:290526/1‑91 (MQ=255)

 taccacgttatcgaaacatcaacacaacaataaaatgaaAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATc                                                                                          >  1:999360‑M1/40‑91 (MQ=255)

 taATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATc                                                                                          <  2:1928595/91‑1 (MQ=255)

  aaTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCa                                                                                         >  2:2600726/1‑91 (MQ=255)

   aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                                        <  2:2089269/91‑1 (MQ=255)

   aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt                                                                                        >  2:1171842/1‑91 (MQ=255)

    tGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtt                                                                                       >  2:933113/1‑91 (MQ=255)

      gcgaTTTACTACATAATGATATCACAAATTAGAAAAAAGGAAGTTATGATTTACTGGCGTTGAGTATATCATAACTTCCTTTTATCAtttt                                                                                     <  2:3340626/88‑1 (MQ=255)

      aGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtttt                                                                                     <  1:3439877/91‑1 (MQ=255)

      aGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtttt                                                                                     <  1:740971/91‑1 (MQ=255)

      aGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtttt                                                                                     <  1:144321/91‑1 (MQ=255)

         ttatactacATAATGATATATCAAATGAGAAAAAAGGAAGTTATGATTTCATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAtt                                                                                  <  2:2312446/88‑1 (MQ=255)

         aTTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAtt                                                                                  >  2:1021864/1‑91 (MQ=255)

          tttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttg                                                                                 <  1:2702063/91‑1 (MQ=255)

          tttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttg                                                                                 <  1:2715210/91‑1 (MQ=255)

           ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                                                                <  2:1139108/91‑1 (MQ=255)

           ttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgt                                                                                <  1:1565761/91‑1 (MQ=255)

            tactacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttgtt                                                                               >  2:660762/1‑91 (MQ=255)

              ctacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgt                                                                             >  2:2352282/1‑91 (MQ=255)

              ctacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgt                                                                             <  2:1310785/91‑1 (MQ=255)

                 cATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgtt                                                                          <  2:1944580/91‑1 (MQ=255)

                 cATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgtt                                                                          >  2:3307803/1‑91 (MQ=255)

                  aTAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgttg                                                                         <  2:2087620/91‑1 (MQ=255)

                   tAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGa                                                                        >  2:475263/1‑91 (MQ=255)

                   tAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGa                                                                        <  2:3581128/91‑1 (MQ=255)

                     aTGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATg                                                                      >  1:1297555/1‑91 (MQ=255)

                      tGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGt                                                                     >  1:2693171/1‑91 (MQ=255)

                          atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                                 <  2:2028548/91‑1 (MQ=255)

                          atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                                 <  1:2452141/91‑1 (MQ=255)

                          atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg                                                                 <  2:847399/91‑1 (MQ=255)

                              cAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATaa                                                             <  2:2270946/91‑1 (MQ=255)

                              cAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATaa                                                             <  1:3628097/91‑1 (MQ=255)

                                 aTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGt                                                          <  1:3212677/91‑1 (MQ=255)

                                  ttAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTg                                                         <  2:1570164/91‑1 (MQ=255)

                                   tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg                                                        <  2:3505331/91‑1 (MQ=255)

                                   tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg                                                        >  1:495738/1‑91 (MQ=255)

                                    aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                                       <  1:455089/91‑1 (MQ=255)

                                    aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                                       <  2:1853915/91‑1 (MQ=255)

                                    aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt                                                       <  2:3878063/91‑1 (MQ=255)

                                     gAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTa                                                      <  1:2503405/91‑1 (MQ=255)

                                       aaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACa                                                    <  2:3834969/91‑1 (MQ=255)

                                        AAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACAt                                                   <  2:3716826‑M1/91‑1 (MQ=255)

                                         AAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATc                                                  <  2:557834‑M1/91‑1 (MQ=255)

                                         AAAGGAAGTTATGATTTAATGGCCTTGAGCATATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATc                                                  <  2:436078‑M1/91‑1 (MQ=255)

                                          tAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATTACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt                                                 >  2:3914801‑M1/2‑91 (MQ=255)

                                          AAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt                                                 >  2:2245275‑M1/1‑91 (MQ=255)

                                          AAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt                                                 <  2:2700209‑M1/91‑1 (MQ=255)

                                          AAGGAAGTTATGATTTAATGGCCTTGAGCCCATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt                                                 <  1:2952446‑M1/91‑1 (MQ=255)

                                           AGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCtt                                                >  2:3625901‑M1/1‑91 (MQ=255)

                                                  tatgataggctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAAc                                         >  2:3799445‑M2/40‑91 (MQ=255)

                                                  tatgataggctcaaggccattaaatcataacttacttatATCATTTTATTGTTGTGTTGCTGTTTCGATAACGTGGTACATCTTATCAAAc                                         >  1:3160103‑M2/40‑91 (MQ=255)

                                                  TATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAAc                                         >  2:2477889‑M1/1‑91 (MQ=255)

                                                   atgataggctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTAGTACATCTTATCAAACa                                        >  1:3389468‑M2/39‑91 (MQ=255)

                                                    tgataggctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACAt                                       >  2:2948201‑M2/38‑91 (MQ=255)

                                                     gataggctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                                      >  1:3111330‑M2/37‑91 (MQ=255)

                                                     GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc                                      >  1:2337985‑M1/1‑91 (MQ=255)

                                                      ataggctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCa                                     >  1:994668‑M2/36‑91 (MQ=255)

                                                      ATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAATATCa                                     >  1:1942683‑M1/1‑91 (MQ=255)

                                                      ATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCa                                     <  1:3714885‑M1/91‑1 (MQ=255)

                                                       taggctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCaa                                    >  2:1121702‑M2/35‑91 (MQ=255)

                                                       TTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCaa                                    <  1:522600‑M1/91‑1 (MQ=255)

                                                        ttAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCACACATCAAt                                   >  2:1357166/1‑91 (MQ=255)

                                                        ttAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAt                                   >  1:656798/1‑91 (MQ=255)

                                                         tAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAAtt                                  <  2:309590/91‑1 (MQ=255)

                                                          gctcaaggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTc                                 >  2:307701‑M2/32‑91 (MQ=255)

                                                          aaTGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTc                                 <  1:3830062/91‑1 (MQ=255)

                                                           aTGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCg                                <  2:765560/91‑1 (MQ=255)

                                                           aTGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCg                                <  2:3128345/91‑1 (MQ=255)

                                                            tGGCCTTGAGCCTATTCTAACTTCCTATTATCAATATTATGTTGTGTTGATGTTTCGATAACGTTGTATATCTTCTCAAACATCAATTCgt                               >  2:658292/1‑90 (MQ=255)

                                                            tGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGa                               <  2:3542968/91‑1 (MQ=255)

                                                             ggCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaa                              <  1:1529248/91‑1 (MQ=255)

                                                             ggCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaa                              <  1:1445389/91‑1 (MQ=255)

                                                              gCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGaaa                             >  2:3266440/1‑91 (MQ=255)

                                                               ccTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAc                            >  1:951989/1‑91 (MQ=255)

                                                               aggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAc                            >  2:3192343‑M2/27‑91 (MQ=255)

                                                                ggccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAcc                           >  1:3702537‑M2/26‑91 (MQ=255)

                                                                cTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAAcc                           >  2:3621409/1‑91 (MQ=255)

                                                                 ttGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCa                          >  1:2812976/1‑91 (MQ=255)

                                                                 gccattaaatcataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCa                          >  2:145652‑M2/25‑91 (MQ=255)

                                                                  tGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCAt                         <  1:3326130/91‑1 (MQ=255)

                                                                  tGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCAt                         >  2:2675448/1‑91 (MQ=255)

                                                                   gAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATg                        <  2:3412601/91‑1 (MQ=255)

                                                                   gAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATg                        >  1:1787752/1‑91 (MQ=255)

                                                                    aGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGc                       <  2:3521482/91‑1 (MQ=255)

                                                                     gCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCa                      >  2:1514049/1‑91 (MQ=255)

                                                                     gCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCa                      <  2:3688812/91‑1 (MQ=255)

                                                                     gCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCa                      <  1:1028052/91‑1 (MQ=255)

                                                                      ccTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCAc                     <  1:1135830/91‑1 (MQ=255)

                                                                       cTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCAcc                    >  1:1541894/1‑91 (MQ=255)

                                                                            ataacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGc               <  1:2427080‑M2/78‑1 (MQ=255)

                                                                             taacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGca              <  2:1833088‑M2/79‑1 (MQ=255)

                                                                              aacttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcat             <  1:103731‑M2/80‑1 (MQ=255)

                                                                               acttccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGcatc            >  1:3254307‑M2/11‑91 (MQ=255)

                                                                                  tccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATg         >  1:2218743‑M2/8‑91 (MQ=255)

                                                                                   ccttttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGa        <  1:565891‑M2/85‑1 (MQ=255)

                                                                                      tttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGatat     <  1:1661805‑M2/88‑1 (MQ=255)

                                                                                      tttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGatat     >  1:1463679‑M2/4‑91 (MQ=255)

                                                                                       ttATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATAtt    <  2:2765805‑M2/89‑1 (MQ=255)

                                                                                       ttATCATTTTATCGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGAGAtt    >  1:3058820‑M2/3‑91 (MQ=255)

ATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAATTCGAAACCATGCACCATGGCATCATGATATTCT  >  USA300TCH1516_ALE/2442766‑2442945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.