| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2455760 | 122 (0.600) | 21 (0.130) | 11/132 | NT | 15.6% | intergenic (+18/+48) | lyrA/rpiA | Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A |
| ? | USA300TCH1516_ALE | = 2455780 | 127 (0.760) | intergenic (+38/+28) | lyrA/rpiA | Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A | |||||
Only 100 of 104 total aligned reads displayed.
AAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2455657‑2455760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcttgctagCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTTTC < USA300TCH1516_ALE/2455780‑2455692 AAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACA < 1:2011729/91‑1AAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACA < 1:2011708/91‑1AAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACA < 2:432912/91‑1AAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACA < 1:328684/91‑1 gtAAGACAGACGCTCATCCGATGAAATTGATGCAGAAAAACATATCG‑AAAAAGCTGAAGGACAATCTGCAGAGAAAAACAAATAATAACAA < 2:3689217/89‑1 AGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAA < 1:3912823/91‑1 AGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAA < 1:3757162/91‑1 AGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAA < 1:1418704/91‑1 AGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAA < 1:1418767/91‑1 AGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAA > 1:1956154/1‑91 AGAAGACAGACGATCATCAGTTGTAATTGATGCAGAGAAACAGATCG‑AAAAAACTGAAGATCAATCTTCAGATAAAAACAAATAATAACAA < 2:3566254/91‑1 AGAAAACAGACGTTCATCAGTTGTAAGTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAA < 2:3689218/91‑1 GAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAA > 1:2256569/1‑91 AAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAG > 1:1186625/1‑91 AAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAG < 1:1776323/91‑1 AAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAG < 1:3514606/91‑1 AAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAG > 1:479814/1‑91 AGACAGACGGTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGC > 1:3539017/1‑91 GACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCG > 1:737388/1‑91 GACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCG < 2:1420504/91‑1 GACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCG > 1:2878876/1‑91 ACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGC > 1:803545/1‑91 ACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGC > 2:3348583/1‑91 ACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGC > 1:1338863/1‑91 ACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGC < 1:1604172/91‑1 CAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCT > 2:1535712/1‑91 CAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCT > 2:1535670/1‑91 CAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCT > 2:3174664/1‑91 GACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTG > 1:1195092/1‑91 GACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTG < 2:1206507/91‑1 ACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACACTCTTCAGATAAAAACAAATAATAACAAATCGCTCGC > 1:1965035/1‑91 ACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGC < 2:3263472/91‑1 CGTTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAAAATGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGC < 1:1081467/91‑1 CGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCT < 2:1466851/91‑1 CGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCT < 2:1098615/91‑1 CGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCT < 2:2355327/91‑1 GTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTA < 2:624132/91‑1 GTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTA > 2:3263042/1‑91 GTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTA > 2:3263118/1‑91 GTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTA > 1:1419623/1‑91 GTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTA < 1:3951676/91‑1 GTTCATCAGTTGTAATTGATGCAGAAAAAAAAAAAA‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTA < 2:3949190/91‑1 TTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAG < 1:828913/91‑1 GTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTT < 2:1047600/91‑1 AATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTT < 1:1555379/91‑1 ATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTA < 2:1570176/91‑1 TGCAGAAAAACATATCG‑AACAAACTGAAGAACAATCTCCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGG < 1:1325755/91‑1 TGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGG < 1:1409387/91‑1 TGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGG < 2:1898732/91‑1 GCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGT < 1:1284946/91‑1 GCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGT < 2:1733732/91‑1 CAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTA < 2:2153716/91‑1 CAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTA < 2:2150921/91‑1 AGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTAC < 2:2320416/91‑1 GAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATATCAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACT < 1:3334485/91‑1 GAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAGCAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACT < 1:3333373/91‑1 GAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACT < 2:3630695/91‑1 GAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACT < 1:666657/91‑1 GAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAAAAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACT < 1:2907486/91‑1 GAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAAAAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACT < 1:2907277/91‑1 AAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAG < 2:1327748/91‑1 AAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGC < 2:2618976/91‑1 AAACATATCG‑AAAAAACTGAAGAACAATCGTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGC < 1:3165515/91‑1 AAAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCGAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTC < 2:3091340/91‑1 AAAGCGCTTGCTAGCATCATCCTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTC > 2:1002791/1‑91 AAGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCG < 1:1311068/91‑1 AGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGA > 1:2442898/1‑91 AGCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGA > 1:3516017/1‑91 GCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGAT > 2:2818785/1‑91 GCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGAT > 2:757021/1‑91 GCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGAT > 2:2113551/1‑91 GCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGAT < 1:2011642/91‑1 GCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTGTATCTGTAGATTGTTCTTCAGTTTTTTCGAT < 2:3901485/91‑1 GCGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTAGTTTTTATCTGAAGATTGTCCTTCAGTTTTTTCGAg > 2:3912921/1‑90 CGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATA < 2:2350307/91‑1 CGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATA < 2:2350360/91‑1 CGCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATA < 1:2397259/91‑1 GCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGTTTGTTCGTCAGTTTTTTCGATAT > 2:3028036/1‑91 GCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATAT > 2:2169522/1‑91 GCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATAT > 1:2930599/1‑91 GCTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATAT > 1:7423/1‑91 GCTTGCTAGCATCATCTCTTTAAGAGGTACTATCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATAT < 1:3380519/91‑1 GCTTGCTAGCATCATCTCTTTAAGAGGTACTAACAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTCCAGTTTTTTCGATAT < 1:3379704/91‑1 CTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATG < 2:650742/91‑1 CTTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATG < 2:3425824/91‑1 TTGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGT < 1:3304314/91‑1 TGCTAGCCTCATCTTTTTAAGAGGTACTAGCAAGCGCTTTATTATTACTTGTTTTTATCTGAAGATGCTTCTTCAGTTTTTTCGATATGTT > 2:3675481/1‑91 TGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTCTTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTT > 2:1866305/1‑91 TGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTT > 2:1434785/1‑91 TGCTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTT > 2:158736/1‑91 GCTCGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTT < 1:3198605/91‑1 CTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTT > 2:2638337/1‑91 CTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTT < 1:3745002/91‑1 CTAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTT < 2:620464/91‑1 TAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTTT < 1:1786970/91‑1 TAGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTTT > 1:1731582/1‑91 AGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGGTTGTTCTTCAGTTTTTTCGATATGTTTTTC < 2:1042629/91‑1 AGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTTTC < 2:2175415/91‑1 AGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTTTC < 2:3022444/91‑1 AGCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTTTC < 2:1622385/91‑1 AAGAAGACAGACGTTCATCAGTTGTAATTGATGCAGAAAAACATATCG‑AAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2455657‑2455760‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagcgcttgctagCATCATCTTTTTAAGAGGTACTAGCAAGCGCTTTGTTATTATTTGTTTTTATCTGAAGATTGTTCTTCAGTTTTTTCGATATGTTTTTC < USA300TCH1516_ALE/2455780‑2455692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |