BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2455760	122 (0.600)	21 (0.130)	11/132	NT	15.6%	intergenic (+18/+48)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A
*	?	USA300TCH1516_ALE	= 2455780	127 (0.760)	21 (0.130)	11/132	NT	15.6%	intergenic (+38/+28)	lyrA/rpiA	Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A

Only 100 of 252 total aligned reads displayed.

CAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAA  >  USA300TCH1516_ALE/2455690‑2455870

ttattgtaggcactcaagagggtgttaaaattttagaaaaataatatatagtatagaAAAGCGCTTGCTAGTACCTCTTAAAAAGatgatg                                                                                            >  2:2665316‑M1/58‑91 (MQ=255)

 tattgtaggcactcaagagggtgttaaaattttagaaaaataatatatagtatagaAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGc                                                                                           >  1:277117‑M1/57‑91 (MQ=255)

  gAAAAACATATCGAAAAAACTGAAGAACAACCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGct                                                                                          <  2:1042629‑M2/91‑3 (MQ=255)

     aaaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGcgagc                                                                                       <  1:3198605‑M2/91‑6 (MQ=255)

      aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAAGAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca                                                                                      >  2:1866305‑M2/1‑85 (MQ=255)

       aCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaa                                                                                     <  1:3304314‑M2/91‑8 (MQ=255)

        cATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaag                                                                                    <  2:3425824‑M2/91‑9 (MQ=255)

         atatCGAAAAAACTGGAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGTTAGTACCTCTTAAAGAGATGATGctagcaagc                                                                                   <  1:3379704‑M2/91‑10 (MQ=255)

         atatCGAAAAAACTGACGAACAAACTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagc                                                                                   >  2:3028036‑M2/1‑82 (MQ=255)

           atCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgc                                                                                 <  1:2011642‑M2/91‑12 (MQ=255)

           atCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgc                                                                                 >  2:757021‑M2/1‑80 (MQ=255)

           atCGAAAAAACTGAAGAACAATCTACAGATACAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgc                                                                                 <  2:3901485‑M2/91‑12 (MQ=255)

              gAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTCGCTAGTACCTCTTAAAAAGATGATGctagcaagcgcttt                                                                              <  2:3091340‑M2/91‑15 (MQ=255)

               aaaaatCTGAAGAACAATCTTCAGATAAAAACAAATAATCACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCtttt                                                                             <  1:3677790/91‑1 (MQ=255)

               aaaaagCTGAAGAACAAGCTTCAGATAAAAACAAATAATGACAAAGCGCTGGCTAGTACCTCTTAAAGAGATGATGCTAGCAAGCGCtttt                                                                             <  2:679027/91‑1 (MQ=255)

                  aaaCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTcta                                                                          <  2:3814238/91‑1 (MQ=255)

                   aaCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctat                                                                         <  2:236363/91‑1 (MQ=255)

                       gaagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCCAGCGCTTTTctatacta                                                                     >  2:2175067/1‑91 (MQ=255)

                        aagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactat                                                                    >  1:1759903/1‑91 (MQ=255)

                         agaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactata                                                                   <  2:1189802/91‑1 (MQ=255)

                          gaaCAATCTTCAGATAGAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                                                  <  2:3785809/91‑1 (MQ=255)

                          gaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatat                                                                  <  1:1506693/91‑1 (MQ=255)

                           aaCAATCTTCAGCTAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatata                                                                 <  2:3287506/91‑1 (MQ=255)

                           aaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatata                                                                 >  2:426098/1‑91 (MQ=255)

                             tgttCTTCAGATAAAAACCAATAATAACATTTCGCTTGCTATTTTCTCTTAAAAAGCTTATGTTATCACGCGCTTTTCTATACTATAtatt                                                               >  2:2345954/4‑91 (MQ=255)

                              aaTCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAtatta                                                              >  2:2058228/1‑91 (MQ=255)

                                tCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATattatt                                                            <  1:185922/91‑1 (MQ=255)

                                  ttCAGATAAAAACAAATAATAACAAAGCGCCGGCTAGGACCTCTTAAAAAGATGATGCTAGCAAGCGCTTCGCTATACTCTATATTAtttt                                                          <  2:2855913/91‑1 (MQ=255)

                                   tCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                                         <  1:1001860/91‑1 (MQ=255)

                                   tCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                                         >  1:2387269/1‑91 (MQ=255)

                                   tCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGACGCTAGCAAGCGCTTTTCTATACTATATATTAttttt                                                         >  2:1645901/1‑91 (MQ=255)

                                    cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc                                                        >  2:2053828/1‑91 (MQ=255)

                                    cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATCATTTTTc                                                        >  1:1958186/1‑91 (MQ=255)

                                      gATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTa                                                      <  1:992205/91‑1 (MQ=255)

                                       aTAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTaa                                                     >  2:1434507/1‑91 (MQ=255)

                                       aTAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTaa                                                     <  2:2129550/91‑1 (MQ=255)

                                         aaaaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTCTCTaaaa                                                   >  2:2757584/1‑91 (MQ=255)

                                              cAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTa                                              >  1:2745242/1‑91 (MQ=255)

                                               aaaTAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTaa                                             >  2:1300265/1‑91 (MQ=255)

                                               aaaTAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTaa                                             <  2:2105895/91‑1 (MQ=255)

                                               aaaTAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTACACTATATATTATTTTTCTAAAATTTTaa                                             >  2:2297010/1‑91 (MQ=255)

                                                 ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                                           <  2:321410/91‑1 (MQ=255)

                                                 ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                                           <  1:3860098/91‑1 (MQ=255)

                                                 ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca                                           >  2:2230091/1‑91 (MQ=255)

                                                   aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                         <  1:909304/91‑1 (MQ=255)

                                                   aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                         <  1:3815510/91‑1 (MQ=255)

                                                   aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                         <  2:128346/91‑1 (MQ=255)

                                                   aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc                                         <  2:2871084/91‑1 (MQ=255)

                                                    ataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAccc                                        >  2:2064341/1‑91 (MQ=255)

                                                     taaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCct                                       <  1:703493/91‑1 (MQ=255)

                                                      aaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctc                                      <  1:3772279/91‑1 (MQ=255)

                                                        cAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt                                    <  2:84041/91‑1 (MQ=255)

                                                        cAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt                                    <  2:1598490/91‑1 (MQ=255)

                                                        cAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt                                    >  1:3005816/1‑91 (MQ=255)

                                                            GCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGt                                <  1:1474673‑M1/91‑1 (MQ=255)

                                                             CGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTg                               <  1:2695740‑M1/91‑1 (MQ=255)

                                                             CGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTg                               <  2:3078742‑M1/91‑1 (MQ=255)

                                                              GCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGc                              >  1:2419764‑M1/1‑91 (MQ=255)

                                                               CTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGCGTGcc                             <  1:602742‑M1/91‑1 (MQ=255)

                                                               CTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGcc                             >  1:423490‑M1/1‑91 (MQ=255)

                                                               CTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGcc                             >  1:768932‑M1/1‑91 (MQ=255)

                                                               CTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGCGcc                             <  1:3555885‑M1/91‑1 (MQ=255)

                                                                TTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCt                            >  2:3710439‑M1/1‑91 (MQ=255)

                                                                TTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCt                            >  2:1053896‑M1/1‑91 (MQ=255)

                                                                  gCTAGTACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgacgattgttcttcagttttttcgatatgttt                          <  1:3165515‑M2/91‑67 (MQ=255)

                                                                  gCTAGTACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgttt                          <  2:2618976‑M2/91‑67 (MQ=255)

                                                                  GCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTAc                          <  2:1784822‑M1/91‑1 (MQ=255)

                                                                    TAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACaa                        >  1:653521‑M1/1‑91 (MQ=255)

                                                                     aGTACCTCTTAAAAAGATGATGctagcaagcgcttttttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttc                       <  1:2907486‑M2/91‑70 (MQ=255)

                                                                     aGTACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttc                       <  2:3630695‑M2/91‑70 (MQ=255)

                                                                      GTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATa                      >  1:693688‑M1/1‑91 (MQ=255)

                                                                       tACCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttctg                     <  2:2150921‑M2/91‑72 (MQ=255)

                                                                        gccTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAGATTATTTTTCTAAAATTGTAACGCCCTCTTGAGTGCCTACAATAAc                    <  2:3349636/90‑1 (MQ=255)

                                                                        aCCTCTTAAAATGATGATGCTAGGAAGCGCTTTTCTATACTATATATTATTTTTCTAAATTTTTAACACCCTCTTGAGTGCCTACAATAAc                    <  2:3020655/91‑1 (MQ=255)

                                                                        aCCTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttctgc                    <  1:1284946‑M2/91‑73 (MQ=255)

                                                                        aCCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                    <  1:802114/91‑1 (MQ=255)

                                                                        aCCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAAc                    <  1:3263042/91‑1 (MQ=255)

                                                                         ccTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctggagattgttcttcagtttgttcgatatgtttttctgca                   <  1:1325755‑M2/91‑74 (MQ=255)

                                                                         ccTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttctgca                   <  2:1898732‑M2/91‑74 (MQ=255)

                                                                         ccTCTTAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttctgca                   <  1:1409387‑M2/91‑74 (MQ=255)

                                                                          ctctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACtt                  <  1:2206926/91‑1 (MQ=255)

                                                                           tctTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTg                 <  2:911442/91‑1 (MQ=255)

                                                                             ttAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGAt               >  1:2263285/1‑91 (MQ=255)

                                                                              tAAAAAGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttctgcatcaat              <  2:1570176‑M2/91‑79 (MQ=255)

                                                                              tAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTACCTACAATAACTTGATc              >  1:3388845/1‑91 (MQ=255)

                                                                               aaaaaGATGATGctagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttctgcatcaatt             <  1:1555379‑M2/91‑80 (MQ=255)

                                                                                  aaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGcc          >  2:2507384/1‑91 (MQ=255)

                                                                                  aaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGcc          >  1:2827745/1‑91 (MQ=255)

                                                                                  aaGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGcc          >  2:632787/1‑91 (MQ=255)

                                                                                    gatgatGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCat        <  1:2573587/91‑1 (MQ=255)

                                                                                    gatgatGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCat        <  2:1791950/91‑1 (MQ=255)

                                                                                     atgatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACTCCCTCTTGAGTGCCTACAATAACTTGATCTGCCata       >  2:3118935/1‑91 (MQ=255)

                                                                                     atgatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCata       <  1:1406656/91‑1 (MQ=255)

                                                                                      tgatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCatat      <  1:2947574/91‑1 (MQ=255)

                                                                                       gatgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATc     >  2:882873/1‑91 (MQ=255)

                                                                                         tgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTa   >  2:3116567/1‑91 (MQ=255)

                                                                                         tgCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTa   <  1:2599423/91‑1 (MQ=255)

                                                                                          gCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaa  >  1:925110/1‑91 (MQ=255)

                                                                                          gCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaa  >  2:520367/1‑91 (MQ=255)

                                                                                          gCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTaa  >  1:605335/1‑91 (MQ=255)

CAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATAACTTGATCTGCCATATCTAA  >  USA300TCH1516_ALE/2455690‑2455870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.