| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2455760 | 122 (0.600) | 21 (0.130) | 11/132 | NT | 15.6% | intergenic (+18/+48) | lyrA/rpiA | Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A |
| ? | USA300TCH1516_ALE | = 2455780 | 127 (0.760) | intergenic (+38/+28) | lyrA/rpiA | Lysostaphin resistance protein A/Ribose‑5‑phosphate isomerase A | |||||
Only 100 of 280 total aligned reads displayed.
TTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATA > USA300TCH1516_ALE/2455670‑2455850 | caGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACct < 2:2188743/91‑1 (MQ=255) aGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACctc > 1:3841794/1‑91 (MQ=255) aGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACctc < 2:2707638/91‑1 (MQ=255) gTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACctct < 1:3875463/91‑1 (MQ=255) gTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACctct < 1:2183451/91‑1 (MQ=255) gTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaa > 2:1644934/1‑91 (MQ=255) tAATTGATGCAGAAAAACATATCGGAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaa < 2:132892/91‑1 (MQ=255) aaTTGATGCAGAAAAACATATCGAAAATACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTaaaa < 2:1368689/91‑1 (MQ=255) aTTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatcttttta < 2:1570176‑M1/91‑14 (MQ=255) aTTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTAGCTAGTACCTCTTaaaaa > 2:1419212/1‑91 (MQ=255) gATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTCGCTAGTACCTCTTAAAAAgat > 2:1086025/1‑91 (MQ=255) tGCAGAAAAACATATCGAACAAACTGAAGAACAATCTCCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagagg < 1:1325755‑M1/91‑19 (MQ=255) tGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAgatga < 1:2378641/91‑1 (MQ=255) ttattgtaggcactcaagagggtgttaaaattttagaaaaataatatatagtatagaAAAGCGCTTGCTAGTACCTCTTAAAAAGatgatg > 1:2809851‑M1/58‑91 (MQ=255) tattgtaggcactcaagagggtgttaaaattttagaaaaataatatatagtatagaAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGc > 1:276523‑M1/57‑91 (MQ=255) aGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagaggtac < 2:2320416‑M1/91‑22 (MQ=255) gAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATATCAAAGCGCTTGCTAGcatcatctttttaagaggtact < 1:3334485‑M1/91‑23 (MQ=255) gAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagaggtact < 2:3630695‑M1/91‑23 (MQ=255) gAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagaggtact < 1:666657‑M1/91‑23 (MQ=255) gAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGct < 2:1622385‑M2/91‑3 (MQ=255) aaaaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctag < 1:3745002‑M2/91‑5 (MQ=255) aaaaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctag < 2:620464‑M2/91‑5 (MQ=255) aaaaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctag > 2:2638337‑M2/1‑87 (MQ=255) aaaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGcatcatctttttaagaggtactagc < 2:2618976‑M1/91‑26 (MQ=255) aaCATATCGAAAAAACTGAAGAAGCATCTTCAGATAAAAACAAGTAATAATAAAGCGCTTGCTAGTACCTCTTAAAAAGATGAGGctagca > 2:3675481‑M2/1‑85 (MQ=255) aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca > 2:158736‑M2/1‑85 (MQ=255) aaCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAAGAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagca > 2:1866305‑M2/1‑85 (MQ=255) aCATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaa < 1:3304314‑M2/91‑8 (MQ=255) cATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaag < 2:3425824‑M2/91‑9 (MQ=255) cATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaag < 2:650742‑M2/91‑9 (MQ=255) atatCGAAAAAACTGACGAACAAACTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagc > 2:3028036‑M2/1‑82 (MQ=255) atatCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGATAGTACCTCTTAAAGAGATGATGctagcaagc < 1:3380519‑M2/91‑10 (MQ=255) tatCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcg < 1:2397259‑M2/91‑11 (MQ=255) tCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGctagcaagcgct > 1:2442898‑M2/1‑79 (MQ=255) gAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTCGCTAGTACCTCTTAAAAAGATGATGctagcaagcgcttt < 2:3091340‑M2/91‑15 (MQ=255) aaaaatCTGAAGAACAATCTTCAGATAAAAACAAATAATCACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCtttt < 1:3677790/91‑1 (MQ=255) aaaaaCTGAAGCACAATCTTCAGATAACAACAAATAATAACAAAGCGCGTGCTAGTACCTCTGAAAAAGATGATGCTAGCCTGCGCTTTTc < 2:1928332/91‑1 (MQ=255) aaaCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTcta < 2:3814238/91‑1 (MQ=255) aCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctata > 1:911442/1‑91 (MQ=255) aCTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctata > 2:2838177/1‑91 (MQ=255) gaagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCCAGCGCTTTTctatacta > 2:2175067/1‑91 (MQ=255) aagaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactat > 1:1759903/1‑91 (MQ=255) agaaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTctatactata < 2:1189802/91‑1 (MQ=255) aaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatata < 1:3026591/91‑1 (MQ=255) aaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACtatata > 2:681821/1‑91 (MQ=255) aaCAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTATCTATACtatata > 2:426494/1‑91 (MQ=255) aaTCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATAtatta > 2:2059387/1‑91 (MQ=255) tCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATattatt < 1:185922/91‑1 (MQ=255) tCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt < 1:1001860/91‑1 (MQ=255) tCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTAttttt > 1:1568908/1‑91 (MQ=255) cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTc < 1:3811445/91‑1 (MQ=255) cAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATCATTTTTc > 1:1958186/1‑91 (MQ=255) gATAAAAACATATAGTAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTa < 2:228791/91‑1 (MQ=255) gATAAAAACAAATAATAGCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTa < 2:909856/91‑1 (MQ=255) gATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTACTa > 1:3190689/1‑91 (MQ=255) aTAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTaa < 2:2129550/91‑1 (MQ=255) aaaaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTaaaa > 2:1769882/1‑91 (MQ=255) aaaaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTCTCTaaaa > 2:2757584/1‑91 (MQ=255) aaaaaCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTAAATATTATTTTTCTaaaa < 2:205661/91‑1 (MQ=255) aCAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAAtttt < 2:2364758/91‑1 (MQ=255) aaaTAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTaa > 2:1300265/1‑91 (MQ=255) aaaTAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTaa < 2:2105895/91‑1 (MQ=255) aataatAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAac < 2:1790531/91‑1 (MQ=255) aataatAACAAAGCGCTCGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAac > 2:483485/1‑91 (MQ=255) aataatAACAAAGCGCTCGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAac > 1:2080638/1‑91 (MQ=255) ataataACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAaca > 2:3228207/1‑91 (MQ=255) aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc < 2:2871084/91‑1 (MQ=255) aataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAcc < 1:909304/91‑1 (MQ=255) ataaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAccc > 2:1217488/1‑91 (MQ=255) ataaCAAAGCGCTTGCTAGTACCTCGTAAAAAGATGATGCTAGCGAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACAccc < 2:3421645/91‑1 (MQ=255) taaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCTAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCct < 1:703102/91‑1 (MQ=255) aaCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctc < 1:508642/91‑1 (MQ=255) aCAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCctct < 1:1521925/91‑1 (MQ=255) cAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCtt > 1:3005746/1‑91 (MQ=255) aaaGCGCTTGCTAGcatcatccttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttc > 2:1002791‑M1/1‑14 (MQ=255) AAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGa < 2:376967‑M1/91‑1 (MQ=255) aGCGCTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcga > 1:3516017‑M1/1‑12 (MQ=255) gcgcTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattattagtttttatctgaagattgtccttcagttttttcgag > 2:3912921‑M1/1‑11 (MQ=255) GCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGt < 1:1474673‑M1/91‑1 (MQ=255) GCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGt > 1:1307396‑M1/1‑91 (MQ=255) cgcTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgata < 2:2350307‑M1/91‑82 (MQ=255) cgcTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgata < 2:2350360‑M1/91‑82 (MQ=255) CGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTg < 2:3078742‑M1/91‑1 (MQ=255) CGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTg < 1:2695740‑M1/91‑1 (MQ=255) CGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTg > 1:3214751‑M1/1‑91 (MQ=255) gcTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatat > 1:2930599‑M1/1‑9 (MQ=255) gcTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatat > 1:7423‑M1/1‑9 (MQ=255) gcTTGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatat > 2:2169522‑M1/1‑9 (MQ=255) gcTTGCTAGcatcatctctttaagaggtactaacaagcgctttgttattatttgtttttatctgaagattgttctccagttttttcgatat < 1:3379704‑M1/91‑83 (MQ=255) CTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGCGTGcc < 1:602742‑M1/91‑1 (MQ=255) TTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCt > 2:1053896‑M1/1‑91 (MQ=255) tGCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtt > 2:1434785‑M1/1‑6 (MQ=255) TGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTa > 1:779619‑M1/1‑91 (MQ=255) gCTAGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgttt < 2:776748‑M1/91‑87 (MQ=255) TAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACaa < 2:3146038‑M1/91‑1 (MQ=255) aGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaaggttgttcttcagttttttcgatatgtttttc < 2:1042629‑M1/91‑90 (MQ=255) aGcatcatctttttaagaggtactagcaagcgctttgttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttc < 2:3022444‑M1/91‑90 (MQ=255) aGTACCTCTTAAAAAGATGATGctagcaagcgcttttttattatttgtttttatctgaagattgttcttcagttttttcgatatgtttttc < 1:2907277‑M2/91‑70 (MQ=255) AGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAAt > 2:3835030‑M1/1‑91 (MQ=255) AGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAAt > 1:1407081‑M1/1‑91 (MQ=255) | TTCATCAGTTGTAATTGATGCAGAAAAACATATCGAAAAAACTGAAGAACAATCTTCAGATAAAAACAAATAATAACAAAGCGCTTGCTAGTACCTCTTAAAAAGATGATGCTAGCAAGCGCTTTTCTATACTATATATTATTTTTCTAAAATTTTAACACCCTCTTGAGTGCCTACAATA > USA300TCH1516_ALE/2455670‑2455850 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |