| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2461467 = | 159 (0.780) | 20 (0.110) | 9/146 | NT | 12.1% | intergenic (‑193/+38) | natA_2/yhaI | ABC transporter ATP‑binding protein NatA/Inner membrane protein YhaI |
| ? | USA300TCH1516_ALE | 2461499 = | 147 (0.790) | intergenic (‑225/+6) | natA_2/yhaI | ABC transporter ATP‑binding protein NatA/Inner membrane protein YhaI | |||||
AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2461563‑2461467‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT > USA300TCH1516_ALE/2461499‑2461587 AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGG > 2:2864980/1‑91AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGG > 2:2231020/1‑91AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGG < 1:3302816/91‑1AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGG < 2:2428624/91‑1AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGG > 1:2736395/1‑91 AAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGA < 2:1512635/91‑1 AAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGA > 2:2438760/1‑91 AAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGA > 2:3460000/1‑91 AAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGAT < 1:675167/91‑1 AAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATA < 1:2912824/91‑1 AGCGTGTACATCTGAAACACCGAAAACACCGGACGAAACAGATAATCAATTGTAATGATGTAAATATCTCGGCACAATGATGCTGGGATAT < 1:3512147/91‑1 AGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATAT < 2:3928360/91‑1 AGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATAT < 1:603061/91‑1 AGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATAT < 2:869242/91‑1 GCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATT > 1:2874363/1‑91 GCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATT < 1:2266110/91‑1 GCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATT < 2:2995599/91‑1 CGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT > 1:2741118/1‑91 CGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT < 1:2729465/91‑1 CGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT < 1:2729452/91‑1 CGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT > 2:2146104/1‑91 ATGATATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGAT > 1:2985722/1‑91 ATGATATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGAT > 1:549328/1‑91 GATATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGT > 2:1718058/1‑91 GATATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGT > 2:1932748/1‑91 TATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTAC > 2:885320/1‑91 TATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTAC > 2:2215749/1‑91 TATAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTAC > 1:3542648/1‑91 TAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACAC > 1:2693632/1‑91 TAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACAC > 1:2073560/1‑91 TAAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACAC > 2:3795012/1‑91 AAATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACG > 2:3382473/1‑91 ATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCT > 1:3742358/1‑91 ATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCT > 2:541175/1‑91 ATATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTACGGTGTTTTCGGTGTTTCAGATGTACACGCT > 1:1209724/1‑91 TATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTT > 1:168639/1‑91 TATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTT > 2:3255718/1‑91 ATCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTT > 2:528327/1‑91 TCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTT > 1:1147868/1‑91 TCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTT > 1:3500004/1‑91 TCTCGGCACAATGATGCTGGGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTT > 1:2568819/1‑91 GATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCAC > 2:1372851/1‑91 GATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCAC > 2:857010/1‑91 GATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCAC > 2:857173/1‑91 GATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCAC > 2:1372893/1‑91 ATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACT < 2:2476129/91‑1 TATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTG < 2:1757801/91‑1 TTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGT > 2:1334807/1‑91 TTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGT < 1:2850233/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 2:1862133/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 2:1862103/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 2:824201/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT > 1:2176423/1‑91 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 1:1933047/91‑1 TTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT < 1:1173639/91‑1 AAAAAGCGTGTACATCTGAAACACCGAAAACACCGGAAGAAACAGATAATCAATTGTAATGATATAAATATCTCGGCACAATGATGCTGGGATATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2461563‑2461467‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTT > USA300TCH1516_ALE/2461499‑2461587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |