BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2461467 =	159 (0.780)	20 (0.110)	9/146	NT	12.1%	intergenic (‑193/+38)	natA_2/yhaI	ABC transporter ATP‑binding protein NatA/Inner membrane protein YhaI
*	?	USA300TCH1516_ALE	2461499 =	147 (0.790)	20 (0.110)	9/146	NT	12.1%	intergenic (‑225/+6)	natA_2/yhaI	ABC transporter ATP‑binding protein NatA/Inner membrane protein YhaI

Only 100 of 241 total aligned reads displayed.

TAAGTATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTTGA  >  USA300TCH1516_ALE/2461409‑2461589

gtgtacatctgaaacaccgaaaacaccggaagaaacagataatcaattgtaatgatatAAATATCCCAGCATCATTGTGCCGAGATATTta                                                                                            >  1:2693632‑M1/59‑91 (MQ=255)

  gtacatctgaaacaccgaaaacaccggaagaaacagataatcaattgtaatgatatAAATATCCCAGCATCATTGTGCCGAGATATTtata                                                                                          >  2:885320‑M1/57‑91 (MQ=255)

  gtacatctgaaacaccgaaaacaccggaagaaacagataatcaattgtaatgatatAAATATCCCAGCATCATTGTGCCGAGATATTtata                                                                                          >  1:3542648‑M1/57‑91 (MQ=255)

  aGTATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTtata                                                                                          >  1:2701682/1‑91 (MQ=255)

   gcaTCCTTAGCACTAGGTATGTTTTTTCCATGGCTTTATTGCCTTATTGGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTatat                                                                                         <  2:1172003/89‑1 (MQ=255)

   gTATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTatat                                                                                         <  1:1697283/91‑1 (MQ=255)

    tATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTGTTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATc                                                                                        <  2:3540169/91‑1 (MQ=255)

    tATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATc                                                                                        >  2:374191/1‑91 (MQ=255)

    tATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATc                                                                                        >  2:304483/1‑91 (MQ=255)

    acatctgaaacaccgaaaacaccggaagaaacagataatcaattgtaatgatatAAATATCCCAGCATCATTGTGCCGAGATATTTATATc                                                                                        >  2:1932748‑M1/55‑91 (MQ=255)

        aTTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTa                                                                                    >  2:1084338/1‑91 (MQ=255)

         ttAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTAc                                                                                   <  1:51475/91‑1 (MQ=255)

         ttAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTAc                                                                                   >  2:1479219/1‑91 (MQ=255)

          tAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACa                                                                                  <  1:1767615/91‑1 (MQ=255)

            gCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAAt                                                                                >  1:3601578/1‑91 (MQ=255)

             cACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAAtt                                                                               <  1:3085955/91‑1 (MQ=255)

             cACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAAtt                                                                               <  1:2654058/91‑1 (MQ=255)

                tAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGAt                                                                            <  2:620009/91‑1 (MQ=255)

                  gATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTa                                                                          >  2:3102836/1‑91 (MQ=255)

                   atatGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTAt                                                                         <  1:1265872/91‑1 (MQ=255)

                    tatGTTCTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATc                                                                        <  1:248232/91‑1 (MQ=255)

                     atGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCt                                                                       >  2:2150645/1‑91 (MQ=255)

                     atGTTTTTTCCATGCCTTTATTGCCTCATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTAGAATTGATTATCt                                                                       >  2:3280309/1‑91 (MQ=255)

                       gTTTTTTCCATTCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGt                                                                     >  2:1315434/1‑91 (MQ=255)

                        ttttttCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGtt                                                                    <  1:1259432/91‑1 (MQ=255)

                         tttttCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGttt                                                                   >  1:3776673/1‑91 (MQ=255)

                          ttttCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTttc                                                                  <  2:2432908/91‑1 (MQ=255)

                              ccATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTcc                                                              <  1:3726336/91‑1 (MQ=255)

                              ccATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTcc                                                              <  2:2352950/91‑1 (MQ=255)

                              ccATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTcc                                                              <  2:111468/91‑1 (MQ=255)

                               cATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCg                                                             >  2:3382216/1‑91 (MQ=255)

                               cATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCg                                                             <  1:193714/91‑1 (MQ=255)

                                 tGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgt                                                           >  1:1523073/1‑91 (MQ=255)

                                 tGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgt                                                           <  2:1631564/91‑1 (MQ=255)

                                 tGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgt                                                           >  2:475491/1‑91 (MQ=255)

                                 tGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgt                                                           >  2:2068010/1‑91 (MQ=255)

                                  gCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgtg                                                          <  1:3288724/91‑1 (MQ=255)

                                   ccTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGgtgt                                                         <  2:1147567/91‑1 (MQ=255)

                                    cTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGtt                                                        >  1:3147141/1‑91 (MQ=255)

                                     tttGTTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCTGTGttt                                                       <  1:3067988/91‑1 (MQ=255)

                                     tttATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGttt                                                       <  1:1061582/91‑1 (MQ=255)

                                     tttATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGttt                                                       <  1:1416033/91‑1 (MQ=255)

                                     tttATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGttt                                                       <  1:2127975/91‑1 (MQ=255)

                                      ttATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGtttt                                                      <  2:1416083/91‑1 (MQ=255)

                                      ttATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGtttt                                                      <  2:313508/91‑1 (MQ=255)

                                         ttGCCTTATTTGTGAAAAAATATCCCAGCATCATTGTGCCGAGGTATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCgg                                                   <  1:3952706/91‑1 (MQ=255)

                                         ttGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCgg                                                   >  2:688506/1‑91 (MQ=255)

                                         ttGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCgg                                                   <  1:2187209/91‑1 (MQ=255)

                                         ttGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCgg                                                   >  1:839987/1‑91 (MQ=255)

                                          tGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGgt                                                  >  2:649583/1‑91 (MQ=255)

                                          agCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGgt                                                  >  2:3213758/2‑91 (MQ=255)

                                             cTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGtt                                               <  2:2770337/91‑1 (MQ=255)

                                                   tGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGAt                                         <  1:2783791/91‑1 (MQ=255)

                                                   atgatataaatatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGAt                                         >  1:2985722‑M2/40‑91 (MQ=255)

                                                   atgatataaatatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGAt                                         >  1:549328‑M2/40‑91 (MQ=255)

                                                    gTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATg                                        <  1:3234961/91‑1 (MQ=255)

                                                     tAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGt                                       >  1:848891/1‑91 (MQ=255)

                                                        aaaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTaca                                    <  2:237893/91‑1 (MQ=255)

                                                         taaatatctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTacac                                   >  1:2073560‑M2/34‑91 (MQ=255)

                                                         aaaaTATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTacac                                   >  2:2176983/1‑91 (MQ=255)

                                                          AAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACg                                  <  1:2729465‑M1/91‑1 (MQ=255)

                                                           AATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGc                                 >  1:2874363‑M1/1‑91 (MQ=255)

                                                           AATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGc                                 <  1:2266110‑M1/91‑1 (MQ=255)

                                                            ATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCt                                <  1:603061‑M1/91‑1 (MQ=255)

                                                              ATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCttt                              <  1:675167‑M1/91‑1 (MQ=255)

                                                               tctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCtttt                             >  1:3500004‑M2/28‑91 (MQ=255)

                                                               tctcggcacaatgatgctgggatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCtttt                             >  1:2568819‑M2/28‑91 (MQ=255)

                                                               TCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCtttt                             <  2:1512635‑M1/91‑1 (MQ=255)

                                                               TCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCtttt                             >  2:3460000‑M1/1‑91 (MQ=255)

                                                                CCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCttttt                            >  2:2231020‑M1/1‑91 (MQ=255)

                                                                CCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCttttt                            >  1:2736395‑M1/1‑91 (MQ=255)

                                                                  cAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGCTGTACACGCTTTTTcc                          >  2:3783729/1‑91 (MQ=255)

                                                                  cAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTcc                          <  2:77834/91‑1 (MQ=255)

                                                                  cAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTcc                          <  1:3253972/91‑1 (MQ=255)

                                                                  cAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTcc                          >  1:2378684/1‑91 (MQ=255)

                                                                  cAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTcc                          <  2:2913480/91‑1 (MQ=255)

                                                                      atcatTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGgtg                      <  1:1029576/91‑1 (MQ=255)

                                                                          ttGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTc                  <  1:2924229/91‑1 (MQ=255)

                                                                          ttGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTc                  <  1:312991/91‑1 (MQ=255)

                                                                           tgtgCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCa                 <  1:1108447/91‑1 (MQ=255)

                                                                              gCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGAt              <  2:3894181/91‑1 (MQ=255)

                                                                              gCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGAt              <  2:815268/91‑1 (MQ=255)

                                                                               ccGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATg             <  2:2257303/91‑1 (MQ=255)

                                                                                cGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGt            >  1:747751/1‑91 (MQ=255)

                                                                                 gagaTATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTc           <  1:3658772/91‑1 (MQ=255)

                                                                                  agaTATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCa          <  2:2818627/91‑1 (MQ=255)

                                                                                  agaTATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCa          >  2:1788336/1‑91 (MQ=255)

                                                                                  agaTATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCa          <  1:132774/91‑1 (MQ=255)

                                                                                  agaTATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCa          <  1:82474/91‑1 (MQ=255)

                                                                                   gatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCAc         >  2:1372893‑M2/8‑91 (MQ=255)

                                                                                   gatatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCAc         >  2:857173‑M2/8‑91 (MQ=255)

                                                                                    atatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACt        <  2:2476129‑M2/85‑1 (MQ=255)

                                                                                     tatttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTg       <  2:1757801‑M2/86‑1 (MQ=255)

                                                                                       tttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGt     <  1:2850233‑M2/88‑1 (MQ=255)

                                                                                       tttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGt     >  2:1334807‑M2/4‑91 (MQ=255)

                                                                                        ttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGtt    <  2:1862103‑M2/89‑1 (MQ=255)

                                                                                        ttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGtt    <  1:1173639‑M2/89‑1 (MQ=255)

                                                                                        ttATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGtt    <  1:1933047‑M2/89‑1 (MQ=255)

                                                                                        ttATATCACTACGATTGATTATCTGTTTCTTCCGGTGTTTACTGTGGTTCATATGTATACGTTTTTTCCGGTGTTTCATACGTCACTGGtt    <  2:2948085/91‑1 (MQ=255)

                                                                                          atatCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTTGa  <  2:1269122/91‑1 (MQ=255)

TAAGTATCATTAGCACTAGATATGTTTTTTCCATGCCTTTATTGCCTTATTTGTAAAAAAATATCCCAGCATCATTGTGCCGAGATATTTATATCATTACAATTGATTATCTGTTTCTTCCGGTGTTTTCGGTGTTTCAGATGTACACGCTTTTTCCGGTGTTTCAGATGTCACTGGTTGA  >  USA300TCH1516_ALE/2461409‑2461589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.