| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2499443 = | 168 (0.820) | 9 (0.050) | 5/142 | NT | 5.6% | intergenic (‑20/‑163) | treP_2/USA300HOU_RS12875 | PTS system trehalose‑specific EIIBC component/hypothetical protein |
| ? | USA300TCH1516_ALE | 2499482 = | 153 (0.850) | intergenic (‑59/‑124) | treP_2/USA300HOU_RS12875 | PTS system trehalose‑specific EIIBC component/hypothetical protein | |||||
CTATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2499541‑2499443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC > USA300TCH1516_ALE/2499482‑2499571 CTATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGGATAAATGGA < 1:161892/91‑1 tacCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATGAAGTGGAATAAATGGAA < 2:1222207/88‑1 TATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAA < 1:2055161/91‑1 ATCTAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATTGAAC < 1:3120037/91‑1 ATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAAC > 1:132018/1‑91 TCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACC < 2:1220334/91‑1 TCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACC < 2:3655618/91‑1 TCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACC > 2:3511991/1‑91 TCAAAAATGGTGTAGGTGTCTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACC > 2:3751418/1‑91 CAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCG < 1:1527332/91‑1 CAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCG > 1:2578576/1‑91 CAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCG < 1:1601831/91‑1 CAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCG < 1:1527489/91‑1 AAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGT < 1:3260832/91‑1 AAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTT < 2:2960408/91‑1 AAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTT < 2:2960353/91‑1 AAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTT > 1:840555/1‑91 AATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTC < 1:258810/91‑1 AATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTC > 2:1613589/1‑91 AATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTC < 2:1854438/91‑1 GAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTCTAAAAATATTTGCAACACTCTATTATCATTTT > 2:71940/1‑91 GTTACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTCTTAGCATTTTATATAAACACCTACACCATTTTTGAT > 2:2217482/1‑91 ACATTAACGTGGAATAAATGGAACCGGTTCCAGAAATATTTGCAACACTCTATTATCATTTTGTATAAACACCTACACCCTTTTTGATAGC > 2:502306/1‑91 ACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGC > 1:3806692/1‑91 ACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGC > 2:763775/1‑91 ACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGC > 1:2196618/1‑91 ACAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGC > 2:2599586/1‑91 CAATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCG > 1:2190852/1‑91 AATAAAGTGGAATAAATGGAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGC > 2:537016/1‑91 AACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATA > 1:2642568/1‑91 ACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATAC < 2:3757057/91‑1 CCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACT < 2:639632/91‑1 CCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACT > 1:3307132/1‑91 CGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTA < 1:702025/91‑1 GGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTAC > 2:3353158/1‑91 GGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTAC < 1:369183/91‑1 GTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACA < 1:2943418/91‑1 GTTCCAAAAATATCTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACA < 1:3955042/91‑1 TTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACAT > 2:3062615/1‑91 TTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACAT > 2:3273909/1‑91 TTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTACTGCTATACTACAT > 1:2721013/1‑91 TCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATG > 1:2668035/1‑91 TCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATG < 2:2892850/91‑1 CCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC > 1:3242100/1‑91 CCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC < 1:3859063/91‑1 CCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC > 2:789363/1‑91 CTATCAAAAATGGTGTAGGTGTTTATATAAAATGATAATAGAGTGTTGCAAATATTTTTGGAACCGGTTACAATAAAGTGGAATAAATGGAACCGGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2499541‑2499443‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGC > USA300TCH1516_ALE/2499482‑2499571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |