BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2499443 =	168 (0.820)	9 (0.050)	5/142	NT	5.6%	intergenic (‑20/‑163)	treP_2/USA300HOU_RS12875	PTS system trehalose‑specific EIIBC component/hypothetical protein
*	?	USA300TCH1516_ALE	2499482 =	153 (0.850)	9 (0.050)	5/142	NT	5.6%	intergenic (‑59/‑124)	treP_2/USA300HOU_RS12875	PTS system trehalose‑specific EIIBC component/hypothetical protein

Only 100 of 250 total aligned reads displayed.

AAAATTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGCA  >  USA300TCH1516_ALE/2499392‑2499572

aaaaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATGCCACTTTATTGTAACCGGTTcc                                                                                            <  2:2371707/91‑1 (MQ=255)

 aaaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCa                                                                                           >  1:3214969/1‑91 (MQ=255)

 aaaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCa                                                                                           <  2:3473076/91‑1 (MQ=255)

 aaaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCa                                                                                           >  1:2660903/1‑91 (MQ=255)

  aaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaa                                                                                          <  1:1109839/91‑1 (MQ=255)

  aaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaa                                                                                          <  1:1518885/91‑1 (MQ=255)

  aaTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaa                                                                                          <  2:3242164/91‑1 (MQ=255)

   aTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaaa                                                                                         >  1:100725/1‑91 (MQ=255)

   aTTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaaa                                                                                         <  1:3666480/91‑1 (MQ=255)

    tttCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaaaa                                                                                        <  1:649728/91‑1 (MQ=255)

     ttcttcTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCaaaaa                                                                                       >  1:966432/1‑91 (MQ=255)

      tcttctGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAat                                                                                      >  2:3307351/1‑91 (MQ=255)

       cttctGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAata                                                                                     <  2:2124192/91‑1 (MQ=255)

        ttctGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAatat                                                                                    >  2:2523464/1‑91 (MQ=255)

         tctGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATAtt                                                                                   >  2:2618201/1‑91 (MQ=255)

            gCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGc                                                                                <  1:3445068/91‑1 (MQ=255)

                 ttGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAacac                                                                           <  2:664493/91‑1 (MQ=255)

                 ttGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAacac                                                                           <  1:1452954/91‑1 (MQ=255)

                 ttGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAacac                                                                           >  1:1410546/1‑91 (MQ=255)

                 ttGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAacac                                                                           >  1:1199071/1‑91 (MQ=255)

                   gCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACActc                                                                         >  1:2318367/1‑91 (MQ=255)

                    cTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACActct                                                                        >  2:143172/1‑91 (MQ=255)

                     ttATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCta                                                                       >  2:1505047/1‑91 (MQ=255)

                      tataATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCtat                                                                      >  2:2714025/1‑91 (MQ=255)

                      tataATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCtat                                                                      <  2:492903/91‑1 (MQ=255)

                      tataATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCtat                                                                      >  1:46896/1‑91 (MQ=255)

                       ataATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCtatt                                                                     <  1:3919709/91‑1 (MQ=255)

                        taATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCtatta                                                                    <  1:100376/91‑1 (MQ=255)

                         aaTTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCtattat                                                                   <  2:3513690/91‑1 (MQ=255)

                          aTTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATc                                                                  >  2:3101901/1‑91 (MQ=255)

                            tCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAt                                                                >  1:781889/1‑91 (MQ=255)

                             cATATATTTAGCCTCCTAATTAGAACCGNTTCCNTTTATTCCACTNTATTGTAACCGGTTNCAAAAATATTTGCNACACTCTATTATCAtt                                                               <  1:1935219/91‑1 (MQ=255)

                             cATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAtt                                                               >  1:375059/1‑91 (MQ=255)

                             cATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAtt                                                               <  1:981684/91‑1 (MQ=255)

                             cATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAtt                                                               >  1:335825/1‑91 (MQ=255)

                             cATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAtt                                                               >  1:1154129/1‑91 (MQ=255)

                              atatatTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAttt                                                              >  2:2978192/1‑91 (MQ=255)

                              atatatTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAttt                                                              >  1:2621331/1‑91 (MQ=255)

                              atatatTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAttt                                                              >  1:858760/1‑91 (MQ=255)

                               tatatTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCAtttt                                                             >  1:2460390/1‑91 (MQ=255)

                               gagtgttgcaaatatttttggaaccggttacaataaagtggaataaatggaaccggttcTAAAAATATTTGCAACACTCTATTATCAtttt                                                             >  2:71940‑M2/60‑91 (MQ=255)

                                  atTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTtata                                                          >  1:1220690/1‑91 (MQ=255)

                                  atTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTtata                                                          <  2:1714148/91‑1 (MQ=255)

                                  atTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTtata                                                          <  2:2477745/91‑1 (MQ=255)

                                   tttAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTtatat                                                         >  1:586746/1‑91 (MQ=255)

                                   tttAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTtatat                                                         >  1:429894/1‑91 (MQ=255)

                                   tttAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAAACGGTACCAAAAATATTTGCAACACTCTATTATCATTTtatat                                                         <  2:1858969/91‑1 (MQ=255)

                                   tttAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACATTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTtatat                                                         <  2:1782043/91‑1 (MQ=255)

                                    ttAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTGATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTtatata                                                        <  2:517341/91‑1 (MQ=255)

                                     tAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATaa                                                       >  2:2206525/1‑91 (MQ=255)

                                      aGCCACCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATaaa                                                      <  2:3701153/91‑1 (MQ=255)

                                         ctcctAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAacac                                                   <  2:928570/91‑1 (MQ=255)

                                           cctAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCt                                                 <  2:3375728/91‑1 (MQ=255)

                                                ttAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACAcc                                            <  1:2184849/91‑1 (MQ=255)

                                                  aGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCAt                                          >  1:2822762/1‑91 (MQ=255)

                                                  aGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCAt                                          >  1:2821241/1‑91 (MQ=255)

                                                  aGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCAt                                          >  2:2154817/1‑91 (MQ=255)

                                                    AACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCAttt                                        <  2:2960353‑M1/91‑1 (MQ=255)

                                                     ACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCAtttt                                       <  1:3260832‑M1/91‑1 (MQ=255)

                                                       CGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTg                                     <  1:1527489‑M1/91‑1 (MQ=255)

                                                       CGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTg                                     >  1:2578576‑M1/1‑91 (MQ=255)

                                                        GGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAGACACCTACACCATTTTTGa                                    >  2:3751418‑M1/1‑91 (MQ=255)

                                                        GGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGa                                    <  2:3655618‑M1/91‑1 (MQ=255)

                                                         GTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGAt                                   >  1:132018‑M1/1‑91 (MQ=255)

                                                          TTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATa                                  <  1:2055161‑M1/91‑1 (MQ=255)

                                                          TTCCATTTATTCCACTTCATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTtttggta                                  <  2:1222207‑M1/91‑4 (MQ=255)

                                                           TCCATTTATCCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAg                                 <  1:161892‑M1/91‑1 (MQ=255)

                                                            ccATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgc                                >  2:1182989/1‑91 (MQ=255)

                                                            acaataaagtggaataaatggaaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgc                                >  1:2196618‑M2/31‑91 (MQ=255)

                                                            acaataaagtggaataaatggaaccggttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgc                                >  1:3806692‑M2/31‑91 (MQ=255)

                                                             cATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgcg                               >  2:1612078/1‑91 (MQ=255)

                                                             cATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgcg                               >  2:3145733/1‑91 (MQ=255)

                                                              aTTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAgcgc                              >  2:858859/1‑91 (MQ=255)

                                                                 tATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcatt                           >  2:606547/1‑91 (MQ=255)

                                                                  aTTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcattc                          <  2:2217181/91‑1 (MQ=255)

                                                                   ttCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGcattca                         >  2:2883491/1‑91 (MQ=255)

                                                                      cACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCAttt                      >  1:3062000/1‑91 (MQ=255)

                                                                       aCTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCAtttt                     >  1:3167322/1‑91 (MQ=255)

                                                                       aCTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCAtttt                     <  1:1888/91‑1 (MQ=255)

                                                                       aCTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATAGAAACACCTACACCATTTTTGATTTCTTATTCAtttt                     >  2:3911103/1‑91 (MQ=255)

                                                                        cTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCAttttt                    >  2:772119/1‑91 (MQ=255)

                                                                        cTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCAttttt                    >  2:3278587/1‑91 (MQ=255)

                                                                         tttATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTa                   <  2:201987/91‑1 (MQ=255)

                                                                          ttATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTAt                  <  2:1916310/91‑1 (MQ=255)

                                                                            aTTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTg                <  1:3128531/91‑1 (MQ=255)

                                                                            aTTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTg                <  1:1792742/91‑1 (MQ=255)

                                                                            aTTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTg                <  2:1649285/91‑1 (MQ=255)

                                                                             ttGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGc               <  2:3816076/91‑1 (MQ=255)

                                                                               gTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTTATTTCGCTTTAGTTTTTTTTGcca             >  2:1375442/1‑89 (MQ=255)

                                                                               gTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCta             <  1:3516048/91‑1 (MQ=255)

                                                                               gTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCta             >  1:1363957/1‑91 (MQ=255)

                                                                               gTAACCGGTTCCAAAAATATTTGCAAAACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCta             >  2:2244221/1‑91 (MQ=255)

                                                                                tAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCtat            <  1:1655682/91‑1 (MQ=255)

                                                                                tAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCtat            <  1:737205/91‑1 (MQ=255)

                                                                                    cGGCTCCAAAAATATTTGCAACACACTATTATCATCTTATATAAACACCTACACCATTTTTTATAGCGTTTTCATTTTTATTGCTTtacta        >  2:2628686/1‑91 (MQ=255)

                                                                                      gttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACa      <  1:2943418‑M2/87‑1 (MQ=255)

                                                                                       ttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACAt     >  2:3062615‑M2/4‑91 (MQ=255)

                                                                                       ttcCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTACTGCTATACTACAt     >  1:2721013‑M2/4‑91 (MQ=255)

                                                                                         cCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGc   <  1:3859063‑M2/90‑1 (MQ=255)

                                                                                          cAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTAcatgca  >  2:1954810/1‑91 (MQ=255)

AAAATTTCTTCTGCGGATTGCTTATAATTCATATATTTAGCCTCCTAATTAGAACCGGTTCCATTTATTCCACTTTATTGTAACCGGTTCCAAAAATATTTGCAACACTCTATTATCATTTTATATAAACACCTACACCATTTTTGATAGCGCATTCATTTTTATTGCTATACTACATGCA  >  USA300TCH1516_ALE/2499392‑2499572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.