| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2533537 = | 140 (0.690) | 21 (0.120) | 8/142 | NT | 13.3% | intergenic (+33/+64) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | 2533595 = | 150 (0.830) | intergenic (+91/+6) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2533635‑2533537‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC > USA300TCH1516_ALE/2533595‑2533684 TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 2:3211100/91‑1TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 2:3210986/91‑1 AAGACGTTTCTTAAATGTTATAAATGAAGGATAATCAAATAGAGCCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG < 2:1290463/91‑1 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG > 2:2599033/1‑91 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG > 1:2851591/1‑91 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG < 2:1380542/91‑1 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG < 2:1395715/91‑1 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG < 1:1359673/91‑1 AAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCG < 1:1251893/91‑1 AAGACGTTTCTGAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTGAGTATGGCGATGAAGCCATATACATGATGCG < 2:3018093/91‑1 AGACGTTTCTTAAATGTTATAGATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGT > 2:2740/1‑91 AGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGT < 2:2678349/91‑1 AGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGT < 2:1073455/91‑1 AGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGT < 2:1014560/91‑1 AGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCAAGTATCATGTTTTAGTATGGAGATGAAGCCATATACATGATGCGT > 2:3565806/1‑91 GACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTG < 2:1906200/91‑1 GACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTG < 1:3460207/91‑1 actTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAGCCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGG < 2:1149445/88‑1 ACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGG > 2:974407/1‑91 CGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGT > 2:3132947/1‑91 CGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGT > 2:1761609/1‑91 CGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGT < 2:1008576/91‑1 CGTTTCTTAAATCGTATAAATGAAGCATGATCAAATGGAACCACGTATCAAGTTTTAGTATTGCGATGAAGCCATATACATGATGCGTGGT < 2:3855772/91‑1 GTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTT > 2:846788/1‑91 GTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTT < 2:3046085/91‑1 GTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTT > 2:1267635/1‑91 GTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTT > 1:70801/1‑91 TTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTC < 1:2776717/91‑1 TTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTC < 1:2777744/91‑1 TTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTC < 1:2778844/91‑1 TTTCTTAAATGTTATAAATGAAGAATAATCAAAGAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTC < 1:3244538/91‑1 ATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACCTTTAAGCCACGTCTCAAT > 2:1510598/1‑91 TCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATT > 1:1157400/1‑91 CATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTC > 2:3634949/1‑91 ATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCT > 1:3781210/1‑91 ATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCT > 1:3781170/1‑91 ATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCT > 2:873281/1‑91 ATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCT > 1:2180380/1‑91 ATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCA‑TTATAACATTTAAGAAACGTCTTAATTCTT > 1:1601861/1‑91 TGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTT > 1:2816789/1‑91 TGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTT > 1:2817012/1‑91 TGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTT < 2:1769433/91‑1 TGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTT < 2:1772023/91‑1 GTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTC > 2:1791579/1‑91 GTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTC > 2:580490/1‑91 GTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTC > 1:3553974/1‑91 GTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTC > 1:3554263/1‑91 GTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTC > 1:2501030/1‑91 GTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTC > 1:3797498/1‑91 GTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATGTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTC > 2:2417936/1‑91 TAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTT > 1:2375785/1‑91 TAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTT > 1:195841/1‑91 CGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCC < 1:905235/91‑1 CGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCC < 1:3093175/91‑1 CGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCC < 2:3450173/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 2:2837242/91‑1 GTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCC < 1:2003386/91‑1 TGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCC > 1:1704363/1‑91 TGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCC > 1:3311929/1‑91 GTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTT < 1:3051303/91‑1 GTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTT < 1:3050739/91‑1 TTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTG < 1:2502141/91‑1 CTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTT < 1:1612774/91‑1 TATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC < 1:2353342/91‑1 TAAGACGTTTCTTAAATGTTATAAATGAAGAATAATCAAATAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2533635‑2533537‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTC > USA300TCH1516_ALE/2533595‑2533684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |