BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2533537 =	140 (0.690)	21 (0.120)	8/142	NT	13.3%	intergenic (+33/+64)	femA_3/tcyC_2	Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC
*	?	USA300TCH1516_ALE	2533595 =	150 (0.830)	21 (0.120)	8/142	NT	13.3%	intergenic (+91/+6)	femA_3/tcyC_2	Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC

Only 100 of 239 total aligned reads displayed.

ATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTCT  >  USA300TCH1516_ALE/2533506‑2533685

atatCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAt                                                                                           <  1:2417855/91‑1 (MQ=255)

atatCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATACGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAt                                                                                           >  2:1294559/1‑91 (MQ=255)

   tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg                                                                                        >  2:72190/1‑91 (MQ=255)

    cGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGa                                                                                       >  2:1561284/1‑91 (MQ=255)

     gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat                                                                                      >  2:955464/1‑91 (MQ=255)

     gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat                                                                                      >  1:3906662/1‑91 (MQ=255)

     gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat                                                                                      <  1:2321618/91‑1 (MQ=255)

         cAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattatt                                                                                  >  1:184240/1‑91 (MQ=255)

          aaGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc                                                                                 <  1:883028/91‑1 (MQ=255)

            gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt                                                                               >  1:2513268/1‑91 (MQ=255)

              ttATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCa                                                                             <  1:663205/91‑1 (MQ=255)

               tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt                                                                            >  1:2114422/1‑91 (MQ=255)

               tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt                                                                            >  1:2899638/1‑91 (MQ=255)

               tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt                                                                            <  2:2745378/91‑1 (MQ=255)

                aTGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAtt                                                                           >  1:1398422/1‑91 (MQ=255)

                aTGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAtt                                                                           >  1:51600/1‑91 (MQ=255)

                  gACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTta                                                                         >  1:1829476/1‑91 (MQ=255)

                   acaacaTAAGAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat                                                                        <  1:3547222/91‑1 (MQ=255)

                   acaacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat                                                                        <  1:2476469/91‑1 (MQ=255)

                     aacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATaa                                                                      <  1:96150/91‑1 (MQ=255)

                     aacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATaa                                                                      <  1:1353856/91‑1 (MQ=255)

                        aTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACAt                                                                   <  2:2808066/91‑1 (MQ=255)

                              aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa                                                             >  1:3652238/1‑91 (MQ=255)

                              aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa                                                             >  1:1075709/1‑91 (MQ=255)

                                GAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaaa                                                           <  1:2776717‑M1/91‑1 (MQ=255)

                                GAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaaa                                                           <  1:2778844‑M1/91‑1 (MQ=255)

                                 AACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc                                                          >  1:70801‑M1/1‑91 (MQ=255)

                                 AACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc                                                          >  2:1267635‑M1/1‑91 (MQ=255)

                                  ACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACg                                                         >  2:3132947‑M1/1‑91 (MQ=255)

                                  ACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACg                                                         <  2:1008576‑M1/91‑1 (MQ=255)

                                    CACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTc                                                       <  2:1906200‑M1/91‑1 (MQ=255)

                                     ACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt                                                      <  2:1073455‑M1/91‑1 (MQ=255)

                                     ACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt                                                      <  2:2678349‑M1/91‑1 (MQ=255)

                                      CGCATCATGTATATGGCTTCATCGCCATACTCAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTCAGAAACGTCtt                                                     <  2:3018093‑M1/91‑1 (MQ=255)

                                      CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt                                                     <  2:1395715‑M1/91‑1 (MQ=255)

                                      CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt                                                     <  1:1251893‑M1/91‑1 (MQ=255)

                                      CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt                                                     >  2:2599033‑M1/1‑91 (MQ=255)

                                       GCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTa                                                    <  2:3210986‑M1/91‑1 (MQ=255)

                                        catcatGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTaa                                                   <  2:44274/91‑1 (MQ=255)

                                        catcatGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTaa                                                   <  1:2208705/91‑1 (MQ=255)

                                          tcatGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAtt                                                 <  2:1541989/91‑1 (MQ=255)

                                           catGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttc                                                <  2:2741077/91‑1 (MQ=255)

                                           catGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttc                                                >  2:2300325/1‑91 (MQ=255)

                                           catGTATATGGCGTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttc                                                <  2:221127/91‑1 (MQ=255)

                                            atgttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct                                               >  1:3781210‑M2/46‑91 (MQ=255)

                                            atgttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCA‑TTATAACATTTAAGAAACGTCTTAAttctt                                              >  1:1601861‑M2/46‑91 (MQ=255)

                                            atGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct                                               <  1:368306/91‑1 (MQ=255)

                                            atGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct                                               <  2:814597/91‑1 (MQ=255)

                                            atGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct                                               <  1:1101652/91‑1 (MQ=255)

                                             tgttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttctt                                              >  1:2817012‑M2/45‑91 (MQ=255)

                                             tgttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttctt                                              <  2:1772023‑M2/47‑1 (MQ=255)

                                             tGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttctt                                              <  2:1586905/91‑1 (MQ=255)

                                              gttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttcttc                                             >  2:1791579‑M2/44‑91 (MQ=255)

                                              gttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttcttc                                             >  2:580490‑M2/44‑91 (MQ=255)

                                              gttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttcttc                                             >  1:3554263‑M2/44‑91 (MQ=255)

                                              gttttagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttcttc                                             >  1:2501030‑M2/44‑91 (MQ=255)

                                              gttttagtatggcgatgaagccatatacatgatgcgtggttctATGTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttcttc                                             >  2:2417936‑M2/44‑91 (MQ=255)

                                                  tagtatggcgatgaagccatatacatgatgcgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGtt                                         >  1:195841‑M2/40‑91 (MQ=255)

                                                  atGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGtt                                         >  1:3398857/1‑91 (MQ=255)

                                                   tGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGttt                                        <  2:214031/91‑1 (MQ=255)

                                                    ggCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGtttt                                       >  1:289307/1‑91 (MQ=255)

                                                      cTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCg                                     >  1:200150/1‑91 (MQ=255)

                                                       ttCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg                                    <  1:1698378/91‑1 (MQ=255)

                                                        tCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGa                                   >  2:1218468/1‑91 (MQ=255)

                                                        tCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGa                                   >  1:832591/1‑91 (MQ=255)

                                                           tCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGa                                >  2:197142/1‑91 (MQ=255)

                                                            cGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGgatgat                               >  1:3193657/1‑91 (MQ=255)

                                                            cGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAt                               >  1:3898313/1‑91 (MQ=255)

                                                            cGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAt                               >  2:1308836/1‑91 (MQ=255)

                                                             gCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAtt                              <  1:689901/91‑1 (MQ=255)

                                                             gCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGAtt                              >  2:1733921/1‑91 (MQ=255)

                                                                aTACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGaa                           >  2:3241196/1‑91 (MQ=255)

                                                                aTACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGaa                           <  2:136711/91‑1 (MQ=255)

                                                                aTACTAAAACATGATACGTGGTTCGATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGaa                           <  2:3686711/91‑1 (MQ=255)

                                                                 tACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAAc                          <  2:2565512/91‑1 (MQ=255)

                                                                 tACTAAAACATGATACATGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAAc                          <  2:2901874/91‑1 (MQ=255)

                                                                   cTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAt                        >  2:3893442/1‑91 (MQ=255)

                                                                   cTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAt                        >  2:3867357/1‑91 (MQ=255)

                                                                    tAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtc                       <  1:1473690/91‑1 (MQ=255)

                                                                      aaaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtctc                     >  1:2055517/1‑91 (MQ=255)

                                                                       aaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATctct                    >  1:2971078/1‑91 (MQ=255)

                                                                       aaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATctct                    <  1:414019/91‑1 (MQ=255)

                                                                        aCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACGTTGAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtctt                   <  2:3810635/91‑1 (MQ=255)

                                                                        aCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtctt                   >  2:3534180/1‑91 (MQ=255)

                                                                         cATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtcttc                  >  2:758654/1‑91 (MQ=255)

                                                                          aTGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtcttct                 <  1:2546956/91‑1 (MQ=255)

                                                                          aTGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtcttct                 >  2:1509818/1‑91 (MQ=255)

                                                                           tGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACGTCTCTTCTg                >  2:3054262/1‑91 (MQ=255)

                                                                            gATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTgg               <  2:1768037/91‑1 (MQ=255)

                                                                             aTACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGa              >  1:3700894/1‑91 (MQ=255)

                                                                              tACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAg             >  2:879118/1‑91 (MQ=255)

                                                                              tACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAg             >  2:338215/1‑91 (MQ=255)

                                                                              tACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAg             <  2:3751605/91‑1 (MQ=255)

                                                                               aCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGc            >  1:1618807/1‑91 (MQ=255)

                                                                                cgtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGcc           <  2:3450173‑M2/82‑1 (MQ=255)

                                                                                 gtggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGccc          <  2:2837242‑M2/83‑1 (MQ=255)

                                                                                  tggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGcccc         >  1:3311929‑M2/8‑91 (MQ=255)

                                                                                  tggttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGcccc         >  1:1704363‑M2/8‑91 (MQ=255)

                                                                                    gttctATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCtt       <  1:3051303‑M2/86‑1 (MQ=255)

                                                                                        tATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTc   <  1:2353342‑M2/90‑1 (MQ=255)

ATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGCCCCTTGTTCT  >  USA300TCH1516_ALE/2533506‑2533685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.