| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2533537 = | 140 (0.690) | 21 (0.120) | 8/142 | NT | 13.3% | intergenic (+33/+64) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | 2533595 = | 150 (0.830) | intergenic (+91/+6) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
Only 100 of 234 total aligned reads displayed.
GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGA > USA300TCH1516_ALE/2533447‑2533626 | ccTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:3817861‑M1/1‑91 (MQ=255) ccTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 2:568861‑M1/1‑91 (MQ=255) cTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGA > 2:391333‑M1/1‑91 (MQ=255) tATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAA < 2:2063428‑M1/91‑1 (MQ=255) tATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAA > 1:2654979‑M1/1‑91 (MQ=255) tATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAA < 2:451858‑M1/91‑1 (MQ=255) aaggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAAc < 1:3051303‑M1/5‑1 (MQ=255) aTCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAAC > 2:791901‑M1/1‑91 (MQ=255) tCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 2:150307‑M1/91‑1 (MQ=255) tCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC > 1:9382‑M1/1‑91 (MQ=255) tCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 2:3405716‑M1/91‑1 (MQ=255) ggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCa > 1:3311929‑M1/85‑91 (MQ=255) ggggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCa > 1:1704363‑M1/85‑91 (MQ=255) cAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA < 2:3809088‑M1/91‑1 (MQ=255) gggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCAc < 2:2837242‑M1/8‑1 (MQ=255) ggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACg < 1:905235‑M1/9‑1 (MQ=255) ccATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGca > 1:2287561/1‑91 (MQ=255) cATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcat < 1:2119314/91‑1 (MQ=255) aTTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatc < 2:1991306/91‑1 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca > 1:1861032/1‑91 (MQ=255) ttACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatca < 2:1169347/91‑1 (MQ=255) tACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatcat > 2:1328146/1‑91 (MQ=255) cTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt < 1:3845970/91‑1 (MQ=255) cTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt > 2:263187/1‑91 (MQ=255) cTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt > 1:2896237/1‑91 (MQ=255) cTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt > 1:255652/1‑91 (MQ=255) tatataAGGTACAAACGTACTTGAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta < 2:3187213/91‑1 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta > 1:850966/1‑91 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta > 2:1076967/1‑91 (MQ=255) atataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGtat > 2:3701101/1‑91 (MQ=255) aaGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGGACCACGCATCATGTATATgg < 2:227519/91‑1 (MQ=255) aaGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATgg < 1:837019/91‑1 (MQ=255) aGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATgga < 2:2077097/91‑2 (MQ=255) aGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGc < 1:204020/91‑1 (MQ=255) gTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCtt < 1:3535809/91‑1 (MQ=255) gTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCtt > 1:3550191/1‑91 (MQ=255) tACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTc < 1:1296302/91‑1 (MQ=255) aCAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCa > 1:1059552/1‑91 (MQ=255) cAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCAGGTATATGGCTCCAt > 2:3045163/1‑91 (MQ=255) aaaCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATc > 2:678528/1‑91 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGcc < 1:48929/91‑1 (MQ=255) aCTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATa < 1:2471882/91‑1 (MQ=255) cTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATAc > 2:3174488/1‑91 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa < 1:1230576/91‑1 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCCCCATACTa > 2:2512508/1‑91 (MQ=255) aacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa > 1:2375785‑M1/53‑91 (MQ=255) aaaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaa > 2:2503214/1‑91 (MQ=255) aaaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaa < 1:1397116/91‑1 (MQ=255) aaaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaa < 1:1937076/91‑1 (MQ=255) gaagaattaagacgtttcttaaatgttataaatgaagaataatcacatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAAc > 2:2417936‑M1/49‑91 (MQ=255) gaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAAc > 1:3797498‑M1/49‑91 (MQ=255) gaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAAc > 1:3554263‑M1/49‑91 (MQ=255) gaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAAc > 1:2501030‑M1/49‑91 (MQ=255) cATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACa < 2:2709152/91‑1 (MQ=255) aagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACa < 2:1769433‑M1/44‑1 (MQ=255) aagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACa > 1:2816789‑M1/48‑91 (MQ=255) agaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 2:873281‑M1/47‑91 (MQ=255) agaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 1:3781170‑M1/47‑91 (MQ=255) agaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 1:2180380‑M1/47‑91 (MQ=255) aagaattaagacgtttcttaaatgttataatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 1:1601861‑M1/47‑91 (MQ=255) aTAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 1:3083951/1‑91 (MQ=255) tAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatg < 1:1764537‑M1/91‑38 (MQ=255) gaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATg > 2:3634949‑M1/46‑91 (MQ=255) aattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGa > 1:1157400‑M1/45‑91 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatga < 1:969863‑M1/91‑39 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGa < 2:1374534/91‑1 (MQ=255) tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgt < 2:1041916‑M2/91‑4 (MQ=255) tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgt < 2:1614806‑M2/91‑4 (MQ=255) cgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtg < 2:375125‑M2/91‑5 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggt < 2:2751161‑M1/91‑47 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggt < 1:697928‑M2/91‑7 (MQ=255) ttAAAATATCGCGCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggt < 2:3292971‑M1/91‑47 (MQ=255) tAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggtt < 1:802905‑M2/91‑8 (MQ=255) aaaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttc < 1:1137525‑M2/91‑9 (MQ=255) aaaaTAGCGCTCCAAGATTATCACAACATAACGAAGAACCTCGCATCATGTGGATGGCTTCATCGCCATACTAAAACATGATAcgtggttc > 2:1713197‑M2/1‑83 (MQ=255) tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg > 2:72190/1‑91 (MQ=255) tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg < 1:158251/91‑1 (MQ=255) tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg > 2:1581244/1‑91 (MQ=255) cGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgtta < 1:1347558‑M2/91‑16 (MQ=255) gCTCCAATATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat < 1:1966443/91‑1 (MQ=255) gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat < 1:2321618/91‑1 (MQ=255) cTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatt > 2:1547029/1‑91 (MQ=255) cTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatt < 1:2484616/91‑1 (MQ=255) tCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatta < 2:2351661/91‑1 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt < 1:345210/91‑1 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt > 1:2513268/1‑91 (MQ=255) ttATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCa < 1:663205/91‑1 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:2114422/1‑91 (MQ=255) aTGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAtt > 1:51600/1‑91 (MQ=255) tGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt > 1:2970526/1‑91 (MQ=255) aacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATaa > 1:1837159/1‑91 (MQ=255) acaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAAc > 2:1782065/1‑91 (MQ=255) aCAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTa > 1:2346401/1‑91 (MQ=255) cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa < 2:326135/91‑1 (MQ=255) cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa < 1:3096644/91‑1 (MQ=255) cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa > 2:1887161/1‑91 (MQ=255) aaaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAg < 1:2906083/91‑1 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa > 2:1949024/1‑91 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa > 1:3650009/1‑91 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa > 2:1718417/1‑91 (MQ=255) | GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGA > USA300TCH1516_ALE/2533447‑2533626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |