| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2533545 | 142 (0.700) | 9 (0.050) | 6/142 | NT | 6.1% | intergenic (+41/+56) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | = 2533585 | 150 (0.830) | intergenic (+81/+16) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2533447‑2533545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaccacgTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGA < USA300TCH1516_ALE/2533585‑2533498 GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAA < 2:2661949/91‑1 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:3817860/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:3817861/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 2:568861/1‑91 CCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAG > 1:491332/1‑91 cgATCAAACCATTACTATATAAGGTACAATCGTACTTAAATCACAAACGGCGTTAAAATATCGCTCCAAGATTATGACAACATAGCAGAGg < 2:545014/89‑2 CTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGA > 2:391333/1‑91 CTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGA < 2:3046431/91‑1 TATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAA < 2:451858/91‑1 TATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAA < 2:2063428/91‑1 TATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAA > 1:2654979/1‑91 ATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAAC > 2:791901/1‑91 ATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAAC > 1:2313127/1‑91 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC > 2:1663193/1‑91 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 2:150307/91‑1 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC > 1:9382/1‑91 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 2:3750124/91‑1 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC < 2:3405716/91‑1 TCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACC > 1:3834401/1‑91 CAAACCATTGCTATATAAGGTACAAACGTACTTAAAGCATAAACGTCGTTAAAATATCGCTCCAAGATTATGCCTACATAACAAAGAACCA < 2:3282203/91‑1 CAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA < 2:3809088/91‑1 CAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCA < 2:2487258/91‑1 AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC < 1:1155419/91‑1 AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC > 1:1160804/1‑91 AAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCAC > 2:1781574/1‑91 TAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATG < 1:1764537/91‑1 agACGTCGTTAAAATATCGCTCCAAGATTATGACAACAAAACAAAGGACCACGTATCATGTTGTAGTATGGCGATGAAGCCATATACATGA < 2:3766934/89‑1 AAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGA < 1:969863/91‑1 CGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 2:746689/91‑1 CGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGC < 1:2995654/91‑1 TCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGT < 2:1718304/91‑1 TTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGT < 2:2751161/91‑1 TTAAAATATCGCGCCAAGATTATGACAACATAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGT < 2:3292971/91‑1 TAACAAAGAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCG < 1:1347558/91‑1 GAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATCCACATGATGCGAGGTTCTTCGTTATGTTGTGATAATCTTGGAGCGCTATTTT > 2:1713197/1‑91 GAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTT < 1:1137525/91‑1 GAACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTT < 1:83338/91‑1 AACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTA < 1:802905/91‑1 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGTGATATTTTAA < 2:867044/91‑1 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAA < 1:697928/91‑1 ACCACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAA < 1:2235267/91‑1 CACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACG > 2:2658482/1‑91 CACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACG < 2:375125/91‑1 ACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGA < 2:1614806/91‑1 ACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGA < 2:1041916/91‑1 ACGTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGA > 1:1227060/1‑91 ACGTATCATGTTTTAGTATGGCGAGGAAGCCATATACAGGATGCGTGGTTTTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGA < 2:3669585/91‑1 GCCTATCAAACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2533447‑2533545‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaccacgTATCATGTTTTAGTATGGCGATGAAGCCATATACATGATGCGTGGTTCTTTGTTATGTTGTCATAATCTTGGAGCGATATTTTAACGA < USA300TCH1516_ALE/2533585‑2533498 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |