| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2533545 | 142 (0.700) | 9 (0.050) | 6/142 | NT | 6.1% | intergenic (+41/+56) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC |
| ? | USA300TCH1516_ALE | = 2533585 | 150 (0.830) | intergenic (+81/+16) | femA_3/tcyC_2 | Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC | |||||
Only 100 of 248 total aligned reads displayed.
AACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTA > USA300TCH1516_ALE/2533455‑2533635 | ggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACg < 1:3093175‑M1/9‑1 (MQ=255)ggctccagaagagatgttcaatcgtccgaaaacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACg < 1:905235‑M1/9‑1 (MQ=255) aCCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGc < 2:354243/91‑1 (MQ=255) ccATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGca < 2:1515593/91‑1 (MQ=255) ccATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGca > 1:2287561/1‑91 (MQ=255) cATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcat < 1:2119238/91‑1 (MQ=255) aTTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGcatc < 2:1991306/91‑1 (MQ=255) aCTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATg > 1:1730331/1‑91 (MQ=255) cTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGt < 1:3845913/91‑1 (MQ=255) tatataAGGTACAAACGTACTTGAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta < 2:3187213/91‑1 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta > 1:850966/1‑91 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta > 2:3345212/1‑91 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta < 1:345809/91‑1 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta > 2:1076967/1‑91 (MQ=255) tatataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGta < 1:2144874/91‑1 (MQ=255) atataAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGtat > 2:3701101/1‑91 (MQ=255) taAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATg > 1:354305/1‑91 (MQ=255) aaGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGGACCACGCATCATGTATATgg < 2:227519/91‑1 (MQ=255) aaGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATgg > 1:1880720/1‑91 (MQ=255) aaGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATgg < 1:837019/91‑1 (MQ=255) aGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATgga < 2:2077097/91‑2 (MQ=255) aGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGc > 2:2477942/1‑91 (MQ=255) aGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGc < 1:204020/91‑1 (MQ=255) aGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGc > 1:58916/1‑91 (MQ=255) ggTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCt < 1:3129832/91‑1 (MQ=255) gTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCtt > 1:3550191/1‑91 (MQ=255) gTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCtt > 1:737934/1‑91 (MQ=255) tACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTc > 2:1021949/1‑91 (MQ=255) tACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTc < 2:3214366/91‑1 (MQ=255) aCAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCa > 1:1059552/1‑91 (MQ=255) cAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCAGGTATATGGCTCCAt > 2:3045163/1‑91 (MQ=255) aaaCGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATc > 2:678528/1‑91 (MQ=255) cGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGcc < 1:48929/91‑1 (MQ=255) gTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCa > 1:254545/1‑91 (MQ=255) cTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATAc > 2:3174488/1‑91 (MQ=255) tAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa < 1:1230576/91‑1 (MQ=255) aacagaagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTa > 1:2375785‑M1/53‑91 (MQ=255) aaaTCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTaa > 2:2503715/1‑91 (MQ=255) aagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACa < 2:1769433‑M1/44‑1 (MQ=255) aagaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACa > 1:2816789‑M1/48‑91 (MQ=255) agaattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt > 1:3781210‑M1/47‑91 (MQ=255) aTAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt < 2:1683827/91‑1 (MQ=255) aTAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACAt < 2:784946/91‑1 (MQ=255) agacgTCGTTAAAATATCGCTCCAAGATTATGACAACAAAACAAAGGACCACGtatcatgttgtagtatggcgatgaagccatatacatga < 2:3766934‑M1/89‑39 (MQ=255) aattaagacgtttcttaaatgttataaatgaagaataatcaaatAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGa > 1:1157400‑M1/45‑91 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGa < 2:1374534/91‑1 (MQ=255) aaaCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCAGCATGTATATGGCTTCATCGCCATACTAAAACATGa < 2:525427/91‑1 (MQ=255) aCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATa > 1:2341240/1‑91 (MQ=255) aCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATa > 1:1266401/1‑91 (MQ=255) cgtcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgc < 2:746689‑M1/91‑42 (MQ=255) tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgt < 2:1718304‑M1/91‑44 (MQ=255) tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgt < 2:1041916‑M2/91‑4 (MQ=255) ttAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggt < 1:697928‑M2/91‑7 (MQ=255) ttAAAATATCACTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggt < 2:867044‑M2/91‑7 (MQ=255) tAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggtt < 1:802905‑M2/91‑8 (MQ=255) tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg < 1:158266/91‑1 (MQ=255) tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg < 1:3391625/91‑1 (MQ=255) cGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgtta < 1:1347558‑M2/91‑16 (MQ=255) cGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGa > 2:1561284/1‑91 (MQ=255) gCTCCAATATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat < 1:1966443/91‑1 (MQ=255) gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat > 2:955464/1‑91 (MQ=255) gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat < 1:3612888/91‑1 (MQ=255) cTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatt < 1:2484616/91‑1 (MQ=255) tCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatta < 2:2351661/91‑1 (MQ=255) ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat < 2:3006366/91‑1 (MQ=255) cAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattatt > 1:184576/1‑91 (MQ=255) aaGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttc < 1:975359/91‑1 (MQ=255) gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt > 1:2513268/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt < 1:289556/91‑1 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt > 1:2899638/1‑91 (MQ=255) tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt < 2:2745378/91‑1 (MQ=255) aTGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAtt > 1:1398422/1‑91 (MQ=255) tGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAttt > 1:2970526/1‑91 (MQ=255) gACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTta > 1:1829476/1‑91 (MQ=255) acaacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat < 1:2476469/91‑1 (MQ=255) caacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtata > 2:1308425/1‑91 (MQ=255) aacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATaa < 1:1353856/91‑1 (MQ=255) aacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATaa < 1:96150/91‑1 (MQ=255) acaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAAc > 2:1782065/1‑91 (MQ=255) cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa < 2:326135/91‑1 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa > 2:1718417/1‑91 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa > 1:3652238/1‑91 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa > 1:676548/1‑91 (MQ=255) aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa > 2:1949024/1‑91 (MQ=255) gAACCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatatttt < 1:1137525‑M1/91‑84 (MQ=255) GAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaaa < 1:2776717‑M1/91‑1 (MQ=255) GAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaaa < 1:2778844‑M1/91‑1 (MQ=255) aCCACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaa < 1:2235267‑M1/91‑86 (MQ=255) aCCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaa < 2:2751161‑M2/91‑46 (MQ=255) ACCACGCATCATGTATATGGCTTCATCGCAATACTAAAACTTGATACGTGGTTCCATTTGATCATGCTTCATTTATACGATTTAAGAAACg < 2:3855772‑M1/91‑1 (MQ=255) CCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGCTCTATTTGATTATTCTTCATTTATAACATTTaagaaaagt < 2:1149445‑M1/91‑4 (MQ=255) cACGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaacg > 2:2658482‑M1/1‑4 (MQ=255) CACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTc < 2:1906200‑M1/91‑1 (MQ=255) aCGtatcatgttttagtatggcgatgaagccatatacatgatgcgtggttctttgttatgttgtcataatcttggagcgatattttaacga < 2:1614806‑M1/91‑89 (MQ=255) aCGtatcatgttttagtatggcgaggaagccatatacaggatgcgtggttttttgttatgttgtcataatcttggagcgatattttaacga < 2:3669585‑M1/91‑89 (MQ=255) ACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt < 2:2678349‑M1/91‑1 (MQ=255) CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt < 2:1395715‑M1/91‑1 (MQ=255) CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt > 2:2599033‑M1/1‑91 (MQ=255) CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGCTCTATTTGATTATCCTTCATTTATAACATTTAAGAAACGTCtt < 2:1290463‑M1/91‑1 (MQ=255) gCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacg < 1:2995654‑M2/91‑51 (MQ=255) | AACCATTACTATATAAGGTACAAACGTACTTAAATCATAAACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTA > USA300TCH1516_ALE/2533455‑2533635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |