BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2533545	142 (0.700)	9 (0.050)	6/142	NT	6.1%	intergenic (+41/+56)	femA_3/tcyC_2	Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC
*	?	USA300TCH1516_ALE	= 2533585	150 (0.830)	9 (0.050)	6/142	NT	6.1%	intergenic (+81/+16)	femA_3/tcyC_2	Aminoacyltransferase FemA/L‑cystine import ATP‑binding protein TcyC

Only 100 of 229 total aligned reads displayed.

ACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGC  >  USA300TCH1516_ALE/2533495‑2533675

aCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATa                                                                                            >  1:1266401/1‑91 (MQ=255)

aCGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATa                                                                                            >  1:2341240/1‑91 (MQ=255)

 cgtcgcTAAAATATCGCTCCAAGATTATCACAACATATCAAAGCACCGCCCATCATGTATATGGCTGCATCGCCATACTAGAACATGATAc                                                                                           <  2:1755663/91‑1 (MQ=255)

   tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgt                                                                                         >  1:1227060‑M2/1‑88 (MQ=255)

   tcgtTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgt                                                                                         <  2:1041916‑M2/91‑4 (MQ=255)

        aaaaTATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttc                                                                                    <  1:83338‑M2/91‑9 (MQ=255)

        aaaaTAGCGCTCCAAGATTATCACAACATAACGAAGAACCTCGCATCATGTGGATGGCTTCATCGCCATACTAAAACATGATAcgtggttc                                                                                    >  2:1713197‑M2/1‑83 (MQ=255)

           atatCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTAt                                                                                 <  1:2417855/91‑1 (MQ=255)

              tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg                                                                              <  1:3391625/91‑1 (MQ=255)

              tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg                                                                              >  2:1581244/1‑91 (MQ=255)

              tCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTg                                                                              <  1:158266/91‑1 (MQ=255)

               cGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgtta                                                                             <  1:1347558‑M2/91‑16 (MQ=255)

               cGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGa                                                                             >  1:915755/1‑91 (MQ=255)

                gCTCCAATATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat                                                                            <  1:1966443/91‑1 (MQ=255)

                gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat                                                                            >  2:955464/1‑91 (MQ=255)

                gCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGat                                                                            <  1:3612888/91‑1 (MQ=255)

                 cTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGatt                                                                           >  2:1547029/1‑91 (MQ=255)

                   ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat                                                                         <  2:3006366/91‑1 (MQ=255)

                   ccAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattat                                                                         <  1:714520/91‑1 (MQ=255)

                    cAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGattatt                                                                        >  1:184240/1‑91 (MQ=255)

                       gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt                                                                     <  1:345210/91‑1 (MQ=255)

                       gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt                                                                     >  1:2513268/1‑91 (MQ=255)

                       gATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTAttctt                                                                     <  2:688497/91‑1 (MQ=255)

                          tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt                                                                  <  2:2745378/91‑1 (MQ=255)

                          tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt                                                                  >  1:2114422/1‑91 (MQ=255)

                          tATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCAt                                                                  <  1:289556/91‑1 (MQ=255)

                             gACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTta                                                               >  2:1340268/1‑91 (MQ=255)

                              acaacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtat                                                              <  1:2476469/91‑1 (MQ=255)

                               caacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtata                                                             >  2:1308425/1‑91 (MQ=255)

                               caacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTtata                                                             <  2:2620789/91‑1 (MQ=255)

                                aacaTAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATaa                                                            >  1:1837159/1‑91 (MQ=255)

                                       cAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTaa                                                     >  2:1887161/1‑91 (MQ=255)

                                        aaaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAg                                                    <  1:2906083/91‑1 (MQ=255)

                                         aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa                                                   >  1:676548/1‑91 (MQ=255)

                                         aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa                                                   >  2:1718417/1‑91 (MQ=255)

                                         aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa                                                   >  1:1075709/1‑91 (MQ=255)

                                         aaGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGa                                                   >  1:3652238/1‑91 (MQ=255)

                                           GAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGaaa                                                 <  1:2777744‑M1/91‑1 (MQ=255)

                                            AACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc                                                <  2:3046085‑M1/91‑1 (MQ=255)

                                            AACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAAc                                                >  2:846788‑M1/1‑91 (MQ=255)

                                             ACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACg                                               >  2:3132947‑M1/1‑91 (MQ=255)

                                             ACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACg                                               <  2:1008576‑M1/91‑1 (MQ=255)

                                             ACCACGCATCATGTATATGGCTTCATCGCAATACTAAAACTTGATACGTGGTTCCATTTGATCATGCTTCATTTATACGATTTAAGAAACg                                               <  2:3855772‑M1/91‑1 (MQ=255)

                                              CCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGCTCTATTTGATTATTCTTCATTTATAACATTTaagaaaagt                                              <  2:1149445‑M1/91‑4 (MQ=255)

                                                ACGCATCATGTATATGGCTTCATCTCCATACTAAAACATGATACTTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt                                            >  2:3565806‑M1/1‑91 (MQ=255)

                                                ACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCt                                            <  2:2678349‑M1/91‑1 (MQ=255)

                                                 CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt                                           >  1:2851591‑M1/1‑91 (MQ=255)

                                                 CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt                                           <  1:1359673‑M1/91‑1 (MQ=255)

                                                 CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt                                           <  2:1380542‑M1/91‑1 (MQ=255)

                                                 CGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCtt                                           <  2:1395715‑M1/91‑1 (MQ=255)

                                                  gCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacg                                          <  1:2995654‑M2/91‑51 (MQ=255)

                                                  gCATCATGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacg                                          <  2:746689‑M2/91‑51 (MQ=255)

                                                  GCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTa                                          <  2:3211100‑M1/91‑1 (MQ=255)

                                                   catcatGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTaa                                         <  2:44274/91‑1 (MQ=255)

                                                   catcatGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTaa                                         <  1:2208705/91‑1 (MQ=255)

                                                   catcatGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTaa                                         >  1:2251229/1‑91 (MQ=255)

                                                     tcatGTATATGGCTTCATCGCCATACTAAAACATGATAcgtggttctttgttatgttgtcataatcttggagcgatattttaacgacgttt                                       <  1:969863‑M2/91‑54 (MQ=255)

                                                      catGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttc                                      <  2:2741077/91‑1 (MQ=255)

                                                      catGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttc                                      >  2:2300325/1‑91 (MQ=255)

                                                       atGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct                                     <  1:1101652/91‑1 (MQ=255)

                                                       atGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttct                                     <  1:368306/91‑1 (MQ=255)

                                                       atGTATATGGCTTCATCGCCATACT‑AAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAAttctt                                    >  2:1528446/1‑91 (MQ=255)

                                                         gTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGTAACGTCTTAAttcttc                                   >  2:3783878/1‑91 (MQ=255)

                                                            tatGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGt                                <  1:1732168/91‑1 (MQ=255)

                                                            tatGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGt                                >  2:1940676/1‑91 (MQ=255)

                                                                 cTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCg                           >  2:2143524/1‑91 (MQ=255)

                                                                  ttCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg                          <  1:1445370/91‑1 (MQ=255)

                                                                  ttCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg                          <  1:1698378/91‑1 (MQ=255)

                                                                  ttCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCgg                          <  1:3909715/91‑1 (MQ=255)

                                                                   tCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGa                         >  2:1251974/1‑91 (MQ=255)

                                                                   tCATCGCCATACTAAAACATGATACGTGGTTCCATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGa                         >  1:832556/1‑91 (MQ=255)

                                                                    cATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGAc                        >  2:3202703/1‑91 (MQ=255)

                                                                     gaagCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACg                       >  1:4544/4‑91 (MQ=255)

                                                                     aTCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACg                       <  1:3903253/91‑1 (MQ=255)

                                                                      tCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGa                      >  2:197142/1‑91 (MQ=255)

                                                                       ttcaaTAGTAAAATATGATACGTGGTTCTATTTGGTTATGCTTCATTTATAACATTTAAGAATCGTCTTAAGTCTTCTGTTTTGGGACGAt                     <  2:254620/87‑1 (MQ=255)

                                                                       cGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGgatgat                     >  1:3193657/1‑91 (MQ=255)

                                                                         ccATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTg                   >  1:562594/1‑91 (MQ=255)

                                                                           aTACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGaa                 >  1:1662031/1‑91 (MQ=255)

                                                                           aTACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGaa                 <  2:3711724/91‑1 (MQ=255)

                                                                            tACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAAc                <  2:2565539/91‑1 (MQ=255)

                                                                            tACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAAc                <  2:3480826/91‑1 (MQ=255)

                                                                            tACTAAAACATGATACATGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAAc                <  2:2901874/91‑1 (MQ=255)

                                                                             aCTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAGTTCTTCTGTTTTCGGACGATTGAACa               <  2:2235267/91‑1 (MQ=255)

                                                                             aCTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACa               <  2:2814254/91‑1 (MQ=255)

                                                                              cTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAt              >  2:3869393/1‑91 (MQ=255)

                                                                               tAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtc             <  1:693628/91‑1 (MQ=255)

                                                                               caaaaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtc             <  2:3921078/90‑1 (MQ=255)

                                                                                aaaaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtct            <  1:2708205/91‑1 (MQ=255)

                                                                                 aaaCATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACAtctc           >  1:2055517/1‑91 (MQ=255)

                                                                                    cATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtcttc        >  2:758654/1‑91 (MQ=255)

                                                                                     aTGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtcttct       <  2:3278258/91‑1 (MQ=255)

                                                                                     aTGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCtcttct       <  1:2546956/91‑1 (MQ=255)

                                                                                      tGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTg      >  2:279275/1‑91 (MQ=255)

                                                                                       gATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTgg     <  2:1768037/91‑1 (MQ=255)

                                                                                        aTACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGa    >  1:3780842/1‑91 (MQ=255)

                                                                                         tACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAg   >  2:879118/1‑91 (MQ=255)

                                                                                         tACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAg   >  2:338215/1‑91 (MQ=255)

                                                                                         tACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAg   <  2:3751605/91‑1 (MQ=255)

                                                                                          aCGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGc  >  2:1284775/1‑91 (MQ=255)

ACGTCGTTAAAATATCGCTCCAAGATTATGACAACATAACAAAGAACCACGCATCATGTATATGGCTTCATCGCCATACTAAAACATGATACGTGGTTCTATTTGATTATTCTTCATTTATAACATTTAAGAAACGTCTTAATTCTTCTGTTTTCGGACGATTGAACATCTCTTCTGGAGC  >  USA300TCH1516_ALE/2533495‑2533675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.